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Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS11810 and ABIE51_RS11815 are separated by 236 nucleotides
ABIE51_RS11815 and ABIE51_RS11820 are separated by 54 nucleotides
ABIE51_RS11820 and ABIE51_RS11825 are separated by 2 nucleotides
ABIE51_RS11825 and ABIE51_RS11830 are separated by 8 nucleotides
ABIE51_RS11810: ABIE51_RS11810 - response regulator, at 2,554,703 to 2,555,350
_RS11810
ABIE51_RS11815: ABIE51_RS11815 - M28 family peptidase, at 2,555,587 to 2,556,396
_RS11815
ABIE51_RS11820: ABIE51_RS11820 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 2,556,451 to 2,557,260
_RS11820
ABIE51_RS11825: ABIE51_RS11825 - type II toxin-antitoxin system HicB family antitoxin, at 2,557,263 to 2,557,658
_RS11825
ABIE51_RS11830: ABIE51_RS11830 - type II toxin-antitoxin system HicA family toxin, at 2,557,667 to 2,557,846
_RS11830
Group
Condition
ABIE51
_RS11810
ABIE51
_RS11815
ABIE51
_RS11820
ABIE51
_RS11825
ABIE51
_RS11830
carbon source
D-Glucuronic Acid (C)
-0.2
-0.5
-0.3
N.D.
N.D.
carbon source
D-Galactose (C)
-0.1
-0.2
-0.5
N.D.
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
-0.7
+0.1
-0.1
N.D.
N.D.
carbon source
succinate (C)
-0.2
-0.2
-0.2
N.D.
N.D.
carbon source
Ying_all64 rep B; time point 3
+0.2
-0.4
-0.0
N.D.
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.2
-0.2
-0.2
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 1
+0.3
-0.3
-0.2
N.D.
N.D.
carbon source
Glucuronamide (C)
-0.4
-0.0
+0.3
N.D.
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.3
-0.2
-0.2
N.D.
N.D.
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.3
-0.1
-0.3
N.D.
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.4
-0.2
-0.1
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.5
-0.1
-0.2
N.D.
N.D.
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.3
-0.2
+0.1
N.D.
N.D.
carbon source
L-Asparagine (C)
+0.2
+0.2
-0.3
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 2
+0.5
-0.2
-0.1
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 1
+0.5
-0.2
-0.0
N.D.
N.D.
carbon source
Ying_all64 rep B; time point 1
+0.5
-0.3
+0.0
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.5
-0.2
+0.0
N.D.
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.5
-0.1
-0.1
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 2
+0.5
-0.1
-0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.2
+0.0
+0.5
N.D.
N.D.
carbon source
pyruvate (C)
+0.6
-0.1
-0.1
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 1
+0.7
-0.1
-0.2
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.5
-0.2
+0.1
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.7
-0.2
-0.1
N.D.
N.D.
carbon source
Ying_sugar7 rep B; time point 3
+0.6
-0.3
+0.2
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 1
+0.6
-0.1
+0.1
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.4
+0.1
+0.2
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 1
+0.8
+0.0
+0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.3
+0.2
+0.3
N.D.
N.D.
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