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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS11275 and ABIE51_RS11280 overlap by 4 nucleotides
ABIE51_RS11280 and ABIE51_RS11285 are separated by 48 nucleotides
ABIE51_RS11285 and ABIE51_RS11290 are separated by 174 nucleotides
ABIE51_RS11290 and ABIE51_RS11295 are separated by 103 nucleotides
ABIE51_RS11275: ABIE51_RS11275 - MFS transporter, at 2,443,496 to 2,444,953
_RS11275
ABIE51_RS11280: ABIE51_RS11280 - hypothetical protein, at 2,444,950 to 2,445,171
_RS11280
ABIE51_RS11285: ABIE51_RS11285 - AraC family transcriptional regulator, at 2,445,220 to 2,446,149
_RS11285
ABIE51_RS11290: ABIE51_RS11290 - aldo/keto reductase, at 2,446,324 to 2,447,322
_RS11290
ABIE51_RS11295: ABIE51_RS11295 - SDR family oxidoreductase, at 2,447,426 to 2,448,187
_RS11295
Group
Condition
ABIE51
_RS11275
ABIE51
_RS11280
ABIE51
_RS11285
ABIE51
_RS11290
ABIE51
_RS11295
carbon source
succinate (C)
-0.2
-0.4
-0.6
-0.3
-0.2
carbon source
Fumarate (C)
+0.1
-0.5
-0.4
-0.0
-0.7
carbon source
D-Maltose (C)
-0.1
-0.3
-0.3
-0.1
-0.5
carbon source
propionate (C)
-0.3
-0.1
-0.2
+0.0
-0.5
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.0
-0.3
-0.3
+0.0
-0.6
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.1
-0.4
-0.1
-0.0
-0.5
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.0
-0.7
-0.2
+0.0
-0.0
carbon source
pyruvate (C)
+0.2
-0.2
-0.4
-0.1
-0.4
dmso control
DMSO control
-0.1
-0.7
-0.2
-0.1
+0.2
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.1
-0.4
-0.5
+0.1
-0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.1
-0.8
-0.1
-0.0
+0.1
stress
R2A with 2-pentyl-furan 10.6842 mM
+0.1
-0.3
-0.2
-0.0
-0.4
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.0
+0.1
+0.1
-0.3
-0.7
carbon source
Fumarate (C)
-0.1
-0.4
-0.2
-0.0
+0.2
carbon source
2-Deoxy-D-Ribose (C)
+0.0
-0.6
-0.3
+0.3
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 1
-0.2
+0.2
-0.2
-0.2
-0.1
carbon source
Ying_sugar7 rep A; time point 3
-0.0
-0.0
+0.2
-0.2
-0.5
carbon source
Glucuronamide (C)
-0.2
+0.4
-0.2
+0.1
-0.5
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.1
+0.3
-0.4
-0.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.0
+0.3
-0.4
+0.1
-0.4
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.1
+0.3
-0.3
+0.1
-0.5
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.1
+0.2
-0.2
+0.2
-0.3
carbon source
D-Glucuronic Acid (C)
-0.0
+0.4
-0.3
+0.3
-0.6
carbon source
acetate (C)
+0.0
+0.2
-0.3
+0.2
-0.2
carbon source
Ying_sugar7 rep C; time point 3
+0.1
+0.1
+0.2
-0.2
-0.4
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.0
+0.3
-0.4
+0.1
+0.2
r2a no stress control
R2A no stress control
+0.1
-0.5
+0.4
+0.1
+0.0
dmso control
DMSO control
+0.1
-0.4
-0.1
+0.0
+0.6
carbon source
D-Galactose (C)
+0.0
+0.4
-0.2
+0.1
+0.3
stress
R2A with 3-octanone 2.65516666666667 mM
+0.0
+0.5
-0.1
-0.1
+0.5
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