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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS11195 and ABIE51_RS11200 overlap by 4 nucleotides
ABIE51_RS11200 and ABIE51_RS11205 are separated by 13 nucleotides
ABIE51_RS11205 and ABIE51_RS11210 are separated by 197 nucleotides
ABIE51_RS11210 and ABIE51_RS11215 are separated by 10 nucleotides
ABIE51_RS11195: ABIE51_RS11195 - metalloregulator ArsR/SmtB family transcription factor, at 2,429,445 to 2,429,846
_RS11195
ABIE51_RS11200: ABIE51_RS11200 - SRPBCC domain-containing protein, at 2,429,843 to 2,430,286
_RS11200
ABIE51_RS11205: ABIE51_RS11205 - SRPBCC family protein, at 2,430,300 to 2,430,836
_RS11205
ABIE51_RS11210: ABIE51_RS11210 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 2,431,034 to 2,431,486
_RS11210
ABIE51_RS11215: ABIE51_RS11215 - LLM class flavin-dependent oxidoreductase, at 2,431,497 to 2,432,486
_RS11215
Group
Condition
ABIE51
_RS11195
ABIE51
_RS11200
ABIE51
_RS11205
ABIE51
_RS11210
ABIE51
_RS11215
carbon source
succinate (C)
-0.0
-1.4
-0.1
-0.2
-0.2
carbon source
Fumarate (C)
-0.6
-0.2
-0.1
-0.3
-0.4
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.5
-0.8
+0.0
+0.1
-0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.4
-0.6
-0.1
+0.0
-0.2
stress
R2A with 3-octanone 5.31033333333333 mM
-0.2
-0.5
-0.1
-0.5
+0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.4
-0.7
+0.1
-0.3
+0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.5
-0.4
+0.1
+0.0
-0.3
carbon source
D-Glucose-6-Phosphate (C)
-0.4
-0.6
-0.0
-0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.4
-0.4
-0.1
-0.0
-0.2
stress
R2A with 3-octanone 5.31033333333333 mM
-0.2
-0.3
-0.3
-0.3
-0.1
stress
R2A with 3-octanone 1.77016666666667 mM
-0.3
-0.2
-0.1
-0.4
-0.2
stress
R2A with 3-octanone 5.31033333333333 mM
-0.5
-0.2
-0.1
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 2
-0.4
-0.5
-0.0
+0.1
-0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
-0.4
-0.2
+0.1
+0.1
-0.5
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.4
-0.4
-0.1
+0.1
-0.1
carbon source
L-Malic (C)
-0.6
-0.4
-0.0
+0.3
-0.3
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.2
-0.5
+0.1
+0.2
-0.5
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.4
-0.4
+0.1
+0.1
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.3
-0.3
+0.1
-0.0
-0.4
stress
R2A with 1-octen-3-ol 1.3568235 mM
-0.5
-0.2
+0.0
+0.3
-0.2
carbon source
D-Cellobiose (C)
+0.3
+0.3
-0.4
-0.6
-0.2
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.4
-0.1
+0.2
+0.1
-0.4
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.2
-0.6
+0.1
+0.1
-0.3
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.2
-0.6
+0.1
+0.2
-0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.1
-0.2
+0.0
+0.3
-0.4
carbon source
Ying_sugar7 rep A; time point 3
-0.5
-0.4
+0.1
+0.2
+0.1
r2a no stress control
R2A no stress control
-0.2
-0.6
+0.3
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.2
-0.6
-0.1
+0.2
+0.1
carbon source
Glucuronamide (C)
+0.3
+0.3
+0.1
-0.2
-0.5
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.2
+0.4
+0.0
+0.4
-0.1
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