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Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS11175 and ABIE51_RS11180 are separated by 2 nucleotides
ABIE51_RS11180 and ABIE51_RS11185 are separated by 139 nucleotides
ABIE51_RS11185 and ABIE51_RS11190 are separated by 1 nucleotides
ABIE51_RS11190 and ABIE51_RS11195 are separated by 137 nucleotides
ABIE51_RS11175: ABIE51_RS11175 - porin, at 2,426,859 to 2,427,941
_RS11175
ABIE51_RS11180: ABIE51_RS11180 - DUF4124 domain-containing protein, at 2,427,944 to 2,428,318
_RS11180
ABIE51_RS11185: ABIE51_RS11185 - hypothetical protein, at 2,428,458 to 2,428,778
_RS11185
ABIE51_RS11190: ABIE51_RS11190 - phage baseplate assembly protein V, at 2,428,780 to 2,429,307
_RS11190
ABIE51_RS11195: ABIE51_RS11195 - metalloregulator ArsR/SmtB family transcription factor, at 2,429,445 to 2,429,846
_RS11195
Group
Condition
ABIE51
_RS11175
ABIE51
_RS11180
ABIE51
_RS11185
ABIE51
_RS11190
ABIE51
_RS11195
carbon source
Ying_all64 rep B; time point 3
-0.5
+0.2
-1.9
-0.2
-0.2
carbon source
L-Malic (C)
-0.6
-0.5
-0.0
+0.2
-0.6
carbon source
Ying_all64 rep A; time point 3
-0.5
+0.2
-1.2
+0.2
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.4
+0.4
-1.2
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.5
+0.2
-0.5
-0.1
-0.5
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.2
+0.4
-1.3
+0.2
-0.2
carbon source
Ying_sugar7 rep A; time point 3
-0.2
+0.3
-0.6
+0.1
-0.5
carbon source
L-Glutamine (C)
-0.7
-0.5
+0.6
+0.3
-0.5
carbon source
L-Asparagine (C)
-0.1
-0.2
+1.0
-1.0
-0.5
carbon source
Ying_sugar7 rep B; time point 3
-0.1
+0.5
-1.0
+0.2
-0.2
carbon source
D-Maltose (C)
-0.1
-0.8
+0.6
-0.3
-0.0
stress
R2A with 3-octanone 1.77016666666667 mM
+0.6
-0.0
-1.1
-0.2
+0.2
carbon source
succinate (C)
+0.3
-1.4
+0.6
-0.1
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.4
-0.5
+0.9
-0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.4
-0.3
+1.0
-0.2
-0.4
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.3
-0.1
+0.4
-0.4
-0.4
r2a no stress control
R2A no stress control
-0.1
-0.2
+0.9
-0.4
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.5
-0.3
+0.6
-0.2
-0.3
carbon source
Ying_Others16 rep A; time point 1
+0.1
-0.4
+0.7
-0.4
+0.2
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.4
+0.1
+0.5
-0.2
-0.4
carbon source
Ying_OrganicAcid7 rep B; time point 1
+0.4
-0.1
+0.7
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.1
+0.1
+1.0
-0.3
-0.4
carbon source
pyruvate (C)
+0.2
-0.4
+1.0
-0.2
-0.2
carbon source
Ying_Others16 rep B; time point 1
-0.3
-0.3
+0.3
+0.6
+0.3
carbon source
D-Galactose (C)
-0.3
-0.2
+1.2
-0.1
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.3
+0.3
+0.9
+0.3
-0.4
carbon source
D-Cellobiose (C)
+0.1
+0.3
+0.8
-0.5
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.1
-0.1
+1.2
+0.2
-0.2
carbon source
Fumarate (C)
+0.9
-0.1
+0.8
+0.5
-0.6
carbon source
L-tyrosine (C)
+0.4
+0.2
+1.1
+0.0
+0.3
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