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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS10445 and ABIE51_RS10450 are separated by 134 nucleotides
ABIE51_RS10450 and ABIE51_RS10455 are separated by 221 nucleotides
ABIE51_RS10455 and ABIE51_RS10460 are separated by 129 nucleotides
ABIE51_RS10460 and ABIE51_RS10465 are separated by 9 nucleotides
ABIE51_RS10445: ABIE51_RS10445 - SCO family protein, at 2,257,430 to 2,258,002
_RS10445
ABIE51_RS10450: ABIE51_RS10450 - FAD-dependent oxidoreductase, at 2,258,137 to 2,259,246
_RS10450
ABIE51_RS10455: ABIE51_RS10455 - hypothetical protein, at 2,259,468 to 2,259,755
_RS10455
ABIE51_RS10460: ABIE51_RS10460 - Na+:solute symporter, at 2,259,885 to 2,261,624
_RS10460
ABIE51_RS10465: ABIE51_RS10465 - TonB-dependent receptor, at 2,261,634 to 2,263,958
_RS10465
Group
Condition
ABIE51
_RS10445
ABIE51
_RS10450
ABIE51
_RS10455
ABIE51
_RS10460
ABIE51
_RS10465
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.2
-0.8
N.D.
-0.1
-0.0
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.2
-0.2
N.D.
-0.3
-0.3
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.2
-0.2
N.D.
-0.3
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.1
-0.8
N.D.
-0.1
+0.0
carbon source
Fumarate (C)
-0.1
-1.0
N.D.
+0.3
-0.0
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.1
-0.4
N.D.
-0.3
-0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.0
-0.4
N.D.
-0.1
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.1
-0.4
N.D.
-0.2
-0.2
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.1
-0.1
N.D.
-0.3
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.0
-0.3
N.D.
-0.2
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.1
-0.1
N.D.
-0.3
-0.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.1
-0.2
N.D.
-0.2
-0.3
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.1
-0.4
N.D.
-0.1
-0.3
carbon source
Glucuronamide (C)
+0.0
-0.7
N.D.
+0.0
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.1
-0.5
N.D.
-0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.2
-0.6
N.D.
+0.1
+0.1
carbon source
Ying_all64 rep C; time point 1
-0.1
-0.3
N.D.
-0.4
+0.2
stress
R2A with 3-octanone 5.31033333333333 mM
-0.1
+0.2
N.D.
-0.4
-0.2
stress
R2A with 3-octanone 2.65516666666667 mM
+0.1
-0.4
N.D.
-0.2
-0.1
carbon source
L-Asparagine (C)
+0.2
-0.6
N.D.
-0.3
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.0
-0.5
N.D.
+0.0
+0.2
carbon source
acetate (C)
+0.2
-0.3
N.D.
+0.2
-0.1
carbon source
Ying_all64 rep C; time point 3
+0.3
-0.1
N.D.
-0.2
+0.2
carbon source
propionate (C)
+0.1
+0.3
N.D.
-0.4
+0.0
carbon source
L-Malic (C)
+0.2
+0.3
N.D.
+0.2
-0.4
carbon source
pyruvate (C)
-0.1
+0.6
N.D.
+0.1
-0.1
carbon source
D-Galactose (C)
+0.3
+0.6
N.D.
-0.3
+0.1
carbon source
Ying_all64 rep A; time point 3
+0.1
+0.3
N.D.
+0.1
+0.3
carbon source
D-Galactose (C)
+0.1
+0.3
N.D.
+0.0
+0.5
carbon source
Fumarate (C)
+0.2
+0.6
N.D.
+0.1
+0.2
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