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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS09600 and ABIE51_RS09605 are separated by 346 nucleotides
ABIE51_RS09605 and ABIE51_RS09610 are separated by 195 nucleotides
ABIE51_RS09610 and ABIE51_RS09615 are separated by 116 nucleotides
ABIE51_RS09615 and ABIE51_RS09620 are separated by 637 nucleotides
ABIE51_RS09600: ABIE51_RS09600 - hypothetical protein, at 2,067,397 to 2,067,651
_RS09600
ABIE51_RS09605: ABIE51_RS09605 - catalase, at 2,067,998 to 2,070,430
_RS09605
ABIE51_RS09610: ABIE51_RS09610 - alpha/beta hydrolase, at 2,070,626 to 2,071,684
_RS09610
ABIE51_RS09615: ABIE51_RS09615 - cation diffusion facilitator family transporter, at 2,071,801 to 2,072,772
_RS09615
ABIE51_RS09620: ABIE51_RS09620 - DUF2092 domain-containing protein, at 2,073,410 to 2,074,153
_RS09620
Group
Condition
ABIE51
_RS09600
ABIE51
_RS09605
ABIE51
_RS09610
ABIE51
_RS09615
ABIE51
_RS09620
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.3
+0.0
-0.2
+0.0
-0.3
carbon source
D-Maltose (C)
-0.4
+0.1
-0.2
-0.1
-0.0
carbon source
propionate (C)
-0.2
+0.1
-0.5
-0.3
+0.1
carbon source
D-Galactose (C)
-0.4
+0.1
-0.0
-0.4
+0.1
carbon source
D-Glucuronic Acid (C)
-0.2
-0.2
-0.3
-0.0
+0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.3
-0.2
+0.2
+0.1
-0.2
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
+0.2
-0.1
-0.1
-0.1
-0.3
carbon source
L-tyrosine (C)
-0.1
+0.2
-0.2
-0.0
-0.3
carbon source
pyruvate (C)
-0.4
+0.3
+0.2
-0.3
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 1
-0.2
-0.1
-0.2
+0.1
+0.2
carbon source
D-Maltose (C)
-0.0
+0.3
-0.5
-0.2
+0.2
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.4
-0.2
-0.2
-0.0
-0.1
carbon source
succinate (C)
-0.2
-0.1
-0.0
-0.1
+0.4
dmso control
DMSO control
+0.0
-0.2
+0.1
-0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.3
-0.2
+0.1
+0.3
+0.1
carbon source
Glucuronamide (C)
-0.1
+0.3
-0.2
-0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.2
-0.1
-0.1
-0.1
+0.3
r2a no stress control
R2A no stress control
+0.2
-0.0
+0.3
+0.1
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.4
-0.2
+0.1
+0.1
+0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.3
-0.2
+0.2
+0.1
+0.2
carbon source
Fumarate (C)
-0.2
+0.1
+0.2
+0.4
+0.2
carbon source
casaminos (C)
+0.5
+0.2
-0.0
-0.0
-0.0
carbon source
L-Malic (C)
+0.2
+0.1
+0.4
+0.1
-0.1
carbon source
Fumarate (C)
+0.2
+0.5
+0.2
-0.0
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.6
-0.1
+0.1
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.3
+0.2
+0.1
+0.1
+0.2
carbon source
acetate (C)
+0.2
+0.3
+0.1
-0.0
+0.2
carbon source
D-Cellobiose (C)
+0.5
+0.2
+0.0
+0.2
+0.4
carbon source
Ying_Others16 rep B; time point 1
+0.6
+0.1
+0.2
+0.2
+0.3
carbon source
2-Deoxy-D-Ribose (C)
+0.7
+0.3
+0.1
+0.2
+0.3
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