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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS09475 and ABIE51_RS09480 are separated by 74 nucleotides
ABIE51_RS09480 and ABIE51_RS09485 are separated by 69 nucleotides
ABIE51_RS09485 and ABIE51_RS09490 are separated by 146 nucleotides
ABIE51_RS09490 and ABIE51_RS09495 are separated by 60 nucleotides
ABIE51_RS09475: ABIE51_RS09475 - IMP dehydrogenase, at 2,041,964 to 2,043,421
_RS09475
ABIE51_RS09480: ABIE51_RS09480 - glutamine-hydrolyzing GMP synthase, at 2,043,496 to 2,045,061
_RS09480
ABIE51_RS09485: ABIE51_RS09485 - 2-methylaconitate cis-trans isomerase PrpF, at 2,045,131 to 2,046,318
_RS09485
ABIE51_RS09490: ABIE51_RS09490 - SRPBCC family protein, at 2,046,465 to 2,046,914
_RS09490
ABIE51_RS09495: ABIE51_RS09495 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 2,046,975 to 2,049,587
_RS09495
Group
Condition
ABIE51
_RS09475
ABIE51
_RS09480
ABIE51
_RS09485
ABIE51
_RS09490
ABIE51
_RS09495
stress
R2A with 2-pentyl-furan 32.0526 mM
N.D.
N.D.
N.D.
-0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
N.D.
N.D.
-0.3
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
N.D.
N.D.
-0.2
N.D.
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 2-pentyl-furan 10.6842 mM
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 2-pentyl-furan 21.3684 mM
N.D.
N.D.
N.D.
-0.2
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
N.D.
N.D.
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
N.D.
N.D.
N.D.
-0.2
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
N.D.
N.D.
N.D.
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
Ying_Nucleobase14 rep A; time point 1
N.D.
N.D.
N.D.
-0.2
N.D.
r2a no stress control
R2A no stress control
N.D.
N.D.
N.D.
-0.1
N.D.
stress
R2A with 3-octanone 1.77016666666667 mM
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
Ying_sugar7 rep A; time point 3
N.D.
N.D.
N.D.
+0.1
N.D.
carbon source
Ying_sugar7 rep A; time point 1
N.D.
N.D.
N.D.
+0.1
N.D.
carbon source
D-Cellobiose (C)
N.D.
N.D.
N.D.
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
pyruvate (C)
N.D.
N.D.
N.D.
+0.2
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
D-Glucose-6-Phosphate (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
D-Maltose (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
Ying_Others16 rep B; time point 1
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
Fumarate (C)
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
succinate (C)
N.D.
N.D.
N.D.
+0.4
N.D.
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