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Cofit
Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS08775 and ABIE51_RS08780 overlap by 8 nucleotides
ABIE51_RS08780 and ABIE51_RS08785 are separated by 106 nucleotides
ABIE51_RS08785 and ABIE51_RS08790 are separated by 410 nucleotides
ABIE51_RS08790 and ABIE51_RS08795 are separated by 2 nucleotides
ABIE51_RS08775: ABIE51_RS08775 - pseudouridine synthase, at 1,861,645 to 1,863,324
_RS08775
ABIE51_RS08780: ABIE51_RS08780 - SMC-Scp complex subunit ScpB, at 1,863,317 to 1,864,339
_RS08780
ABIE51_RS08785: ABIE51_RS08785 - ScpA family protein, at 1,864,446 to 1,865,360
_RS08785
ABIE51_RS08790: ABIE51_RS08790 - YciI family protein, at 1,865,771 to 1,866,070
_RS08790
ABIE51_RS08795: ABIE51_RS08795 - BolA family protein, at 1,866,073 to 1,866,351
_RS08795
Group
Condition
ABIE51
_RS08775
ABIE51
_RS08780
ABIE51
_RS08785
ABIE51
_RS08790
ABIE51
_RS08795
carbon source
Ying_AminoAcid20 rep B; time point 3
+1.7
-4.3
-5.1
-1.7
-0.6
carbon source
Ying_AminoAcid20 rep A; time point 3
+1.8
-4.2
-5.2
-1.8
-0.5
carbon source
Ying_AminoAcid20 rep C; time point 3
+1.9
-4.0
-5.3
-1.6
-0.5
carbon source
Ying_AminoAcid20 rep A; time point 2
+1.6
-4.2
-4.4
-1.2
-0.1
carbon source
Ying_sugar7 rep B; time point 3
+0.2
-3.7
-4.3
+0.1
-0.4
carbon source
Ying_AminoAcid20 rep B; time point 2
+1.8
-3.7
-4.6
-1.3
-0.2
carbon source
Ying_sugar7 rep A; time point 3
-0.0
-3.6
-4.1
+0.1
-0.3
carbon source
Ying_AminoAcid20 rep C; time point 2
+1.9
-4.3
-4.4
-1.2
-0.1
carbon source
Ying_sugar7 rep C; time point 3
+0.3
-3.7
-3.9
+0.1
-0.5
carbon source
Ying_all64 rep C; time point 3
+1.3
-3.3
-3.8
-0.1
-0.3
carbon source
Ying_all64 rep B; time point 3
+1.3
-3.1
-3.8
-0.3
-0.3
carbon source
Ying_sugar7 rep A; time point 2
+0.3
-3.0
-2.9
-0.2
+0.1
carbon source
Ying_sugar7 rep C; time point 2
+0.5
-3.0
-2.7
-0.1
-0.2
carbon source
Ying_all64 rep A; time point 3
+1.5
-2.8
-3.6
-0.3
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 1
+1.7
-2.4
-3.3
-0.8
-0.3
carbon source
Ying_sugar7 rep B; time point 2
+0.6
-2.5
-3.2
-0.1
+0.1
carbon source
Ying_all64 rep B; time point 2
+1.2
-2.8
-3.1
-0.2
+0.0
carbon source
Ying_all64 rep C; time point 2
+1.3
-2.9
-2.8
-0.3
+0.0
carbon source
Ying_AminoAcid20 rep A; time point 1
+1.5
-2.0
-3.0
-0.7
-0.2
carbon source
Ying_AminoAcid20 rep B; time point 1
+1.6
-2.3
-2.8
-0.9
-0.1
carbon source
Ying_all64 rep A; time point 2
+1.1
-2.4
-2.7
-0.2
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
+0.8
-2.6
-2.2
-0.2
+0.0
carbon source
Ying_OrganicAcid7 rep A; time point 2
+1.0
-2.4
-2.4
-0.1
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 2
+0.9
-2.4
-2.4
+0.0
+0.2
carbon source
Ying_all64 rep B; time point 1
+0.9
-1.9
-1.7
-0.2
-0.1
carbon source
Ying_all64 rep A; time point 1
+0.8
-1.7
-1.5
-0.3
-0.0
carbon source
Ying_sugar7 rep C; time point 1
+0.6
-1.6
-1.7
+0.1
-0.1
carbon source
Ying_all64 rep C; time point 1
+1.0
-1.7
-1.5
-0.2
-0.0
carbon source
Ying_sugar7 rep A; time point 1
+0.9
-1.5
-1.4
-0.1
-0.0
carbon source
D-Glucuronic Acid (C)
-2.6
+0.9
+0.2
+0.1
-0.1
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ABIE51_RS08785
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