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Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS08260 and ABIE51_RS08265 are separated by 144 nucleotides
ABIE51_RS08265 and ABIE51_RS08270 are separated by 99 nucleotides
ABIE51_RS08270 and ABIE51_RS08275 overlap by 4 nucleotides
ABIE51_RS08275 and ABIE51_RS08280 are separated by 45 nucleotides
ABIE51_RS08260: ABIE51_RS08260 - tryptophan synthase subunit beta, at 1,756,301 to 1,757,509
_RS08260
ABIE51_RS08265: ABIE51_RS08265 - tryptophan synthase subunit alpha, at 1,757,654 to 1,758,472
_RS08265
ABIE51_RS08270: ABIE51_RS08270 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,758,572 to 1,759,459
_RS08270
ABIE51_RS08275: ABIE51_RS08275 - phosphoglucosamine mutase, at 1,759,456 to 1,760,796
_RS08275
ABIE51_RS08280: ABIE51_RS08280 - sulfatase-like hydrolase/transferase, at 1,760,842 to 1,762,689
_RS08280
Group
Condition
ABIE51
_RS08260
ABIE51
_RS08265
ABIE51
_RS08270
ABIE51
_RS08275
ABIE51
_RS08280
carbon source
Ying_sugar7 rep A; time point 2
-5.3
-6.9
N.D.
N.D.
+0.0
carbon source
Ying_sugar7 rep C; time point 2
-5.3
-6.9
N.D.
N.D.
+0.1
carbon source
Ying_sugar7 rep B; time point 2
-5.4
-6.2
N.D.
N.D.
+0.1
carbon source
Ying_sugar7 rep C; time point 3
-4.6
-6.4
N.D.
N.D.
+0.1
carbon source
Ying_sugar7 rep A; time point 3
-4.6
-6.4
N.D.
N.D.
+0.1
carbon source
Ying_sugar7 rep B; time point 3
-4.4
-6.3
N.D.
N.D.
-0.0
carbon source
casaminos (C)
-4.4
-4.9
N.D.
N.D.
+0.0
carbon source
casaminos (C)
-4.5
-3.8
N.D.
N.D.
+0.0
carbon source
Ying_sugar7 rep A; time point 1
-4.2
-4.1
N.D.
N.D.
+0.1
carbon source
Ying_OrganicAcid7 rep B; time point 2
-4.0
-3.4
N.D.
N.D.
+0.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
-3.8
-3.2
N.D.
N.D.
+0.1
carbon source
Ying_sugar7 rep C; time point 1
-3.3
-3.3
N.D.
N.D.
+0.0
carbon source
Ying_OrganicAcid7 rep A; time point 2
-3.4
-3.0
N.D.
N.D.
+0.2
carbon source
D-Galactose (C)
-2.6
-3.2
N.D.
N.D.
-0.1
carbon source
D-Galactose (C)
-3.1
-2.5
N.D.
N.D.
-0.1
carbon source
D-Glucose-6-Phosphate (C)
-2.1
-2.5
N.D.
N.D.
+0.1
carbon source
pyruvate (C)
-2.3
-1.9
N.D.
N.D.
+0.1
carbon source
acetate (C)
-1.8
-2.4
N.D.
N.D.
-0.0
carbon source
D-Glucose-6-Phosphate (C)
-1.8
-2.1
N.D.
N.D.
-0.0
carbon source
D-Maltose (C)
-1.9
-1.9
N.D.
N.D.
+0.1
carbon source
Ying_OrganicAcid7 rep C; time point 1
-1.7
-1.5
N.D.
N.D.
+0.1
carbon source
pyruvate (C)
-1.4
-1.3
N.D.
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-1.3
-1.3
N.D.
N.D.
+0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-1.1
-1.4
N.D.
N.D.
+0.1
carbon source
Ying_OrganicAcid7 rep A; time point 1
-1.3
-1.2
N.D.
N.D.
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-1.1
-1.3
N.D.
N.D.
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-1.2
-1.2
N.D.
N.D.
+0.2
carbon source
Ying_AminoAcid20 rep A; time point 1
+1.6
+0.9
N.D.
N.D.
-0.0
carbon source
Ying_AminoAcid20 rep B; time point 1
+1.6
+0.8
N.D.
N.D.
+0.1
carbon source
Ying_AminoAcid20 rep C; time point 1
+1.6
+0.9
N.D.
N.D.
+0.1
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