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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS08015 and ABIE51_RS08020 overlap by 4 nucleotides
ABIE51_RS08020 and ABIE51_RS08025 are separated by 28 nucleotides
ABIE51_RS08025 and ABIE51_RS08030 are separated by 27 nucleotides
ABIE51_RS08030 and ABIE51_RS08035 are separated by 148 nucleotides
ABIE51_RS08015: ABIE51_RS08015 - polynucleotide adenylyltransferase PcnB, at 1,705,199 to 1,706,524
_RS08015
ABIE51_RS08020: ABIE51_RS08020 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,706,521 to 1,707,051
_RS08020
ABIE51_RS08025: ABIE51_RS08025 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,707,080 to 1,707,916
_RS08025
ABIE51_RS08030: ABIE51_RS08030 - pantoate--beta-alanine ligase, at 1,707,944 to 1,708,792
_RS08030
ABIE51_RS08035: ABIE51_RS08035 - aspartate 1-decarboxylase, at 1,708,941 to 1,709,321
_RS08035
Group
Condition
ABIE51
_RS08015
ABIE51
_RS08020
ABIE51
_RS08025
ABIE51
_RS08030
ABIE51
_RS08035
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-1.0
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-1.0
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep B; time point 3
-1.0
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.9
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.9
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.9
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep A; time point 3
-0.8
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep A; time point 1
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 1
-0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep A; time point 2
-0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep C; time point 2
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep B; time point 2
-0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep B; time point 2
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep A; time point 1
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_all64 rep C; time point 3
-0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
+0.8
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_sugar7 rep B; time point 3
+0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 3
+0.9
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 3
+1.0
N.D.
N.D.
N.D.
N.D.
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