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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS07570 and ABIE51_RS07575 are separated by 219 nucleotides
ABIE51_RS07575 and ABIE51_RS07580 are separated by 232 nucleotides
ABIE51_RS07580 and ABIE51_RS07585 overlap by 4 nucleotides
ABIE51_RS07585 and ABIE51_RS07590 are separated by 110 nucleotides
ABIE51_RS07570: ABIE51_RS07570 - enoyl-CoA hydratase-related protein, at 1,600,355 to 1,601,137
_RS07570
ABIE51_RS07575: ABIE51_RS07575 - FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein, at 1,601,357 to 1,602,040
_RS07575
ABIE51_RS07580: ABIE51_RS07580 - CoA pyrophosphatase, at 1,602,273 to 1,603,090
_RS07580
ABIE51_RS07585: ABIE51_RS07585 - sulfurtransferase, at 1,603,087 to 1,603,950
_RS07585
ABIE51_RS07590: ABIE51_RS07590 - substrate-binding domain-containing protein, at 1,604,061 to 1,605,395
_RS07590
Group
Condition
ABIE51
_RS07570
ABIE51
_RS07575
ABIE51
_RS07580
ABIE51
_RS07585
ABIE51
_RS07590
stress
R2A with 2-pentyl-furan 32.0526 mM
N.D.
-5.9
+0.3
-0.2
-0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
N.D.
-4.9
-0.0
-0.2
+0.1
carbon source
D-Glucose-6-Phosphate (C)
N.D.
-4.4
-0.2
-0.2
-0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
N.D.
-4.6
+0.3
+0.1
+0.1
carbon source
Ying_sugar7 rep A; time point 2
N.D.
-3.7
+0.1
-0.2
-0.0
stress
R2A with 2-pentyl-furan 32.0526 mM
N.D.
-3.9
+0.2
-0.0
-0.0
carbon source
D-Galactose (C)
N.D.
-3.4
-0.2
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
N.D.
-4.0
+0.2
+0.0
+0.1
carbon source
Ying_sugar7 rep C; time point 2
N.D.
-3.3
+0.0
-0.3
-0.0
carbon source
Glucuronamide (C)
N.D.
-2.6
-0.1
-0.8
-0.1
carbon source
Ying_sugar7 rep B; time point 2
N.D.
-3.3
+0.1
-0.1
-0.1
carbon source
Ying_sugar7 rep B; time point 3
N.D.
-3.1
+0.1
-0.2
-0.1
carbon source
Ying_sugar7 rep A; time point 1
N.D.
-2.9
-0.2
-0.1
-0.0
carbon source
Ying_sugar7 rep C; time point 3
N.D.
-3.2
+0.2
-0.1
-0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
-3.2
+0.3
-0.1
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
-3.4
+0.3
+0.2
-0.1
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
N.D.
-3.5
+0.2
+0.3
-0.0
carbon source
acetate (C)
N.D.
-1.9
-0.6
-0.3
-0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
-2.6
-0.3
-0.0
+0.0
carbon source
Ying_OrganicAcid7 rep B; time point 2
N.D.
-2.7
+0.2
-0.1
-0.2
carbon source
Ying_sugar7 rep A; time point 3
N.D.
-3.1
+0.5
-0.0
-0.1
carbon source
Ying_sugar7 rep C; time point 1
N.D.
-2.9
+0.3
-0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
-2.8
+0.3
-0.1
+0.1
carbon source
Ying_Nucleobase14 rep C; time point 1
N.D.
-2.3
-0.2
+0.1
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
-2.6
+0.2
-0.1
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
-2.5
+0.4
+0.1
+0.1
carbon source
Ying_OrganicAcid7 rep B; time point 1
N.D.
-2.7
+0.3
+0.4
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
-2.7
+0.5
+0.4
-0.0
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
N.D.
-2.4
+0.4
+0.1
-0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
N.D.
-2.2
+0.5
-0.2
+0.0
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