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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS07555 and ABIE51_RS07560 are separated by 372 nucleotides
ABIE51_RS07560 and ABIE51_RS07565 overlap by 4 nucleotides
ABIE51_RS07565 and ABIE51_RS07570 overlap by 1 nucleotides
ABIE51_RS07570 and ABIE51_RS07575 are separated by 219 nucleotides
ABIE51_RS07555: ABIE51_RS07555 - OprO/OprP family phosphate-selective porin, at 1,597,561 to 1,598,847
_RS07555
ABIE51_RS07560: ABIE51_RS07560 - endonuclease III, at 1,599,220 to 1,599,966
_RS07560
ABIE51_RS07565: ABIE51_RS07565 - hypothetical protein, at 1,599,963 to 1,600,355
_RS07565
ABIE51_RS07570: ABIE51_RS07570 - enoyl-CoA hydratase-related protein, at 1,600,355 to 1,601,137
_RS07570
ABIE51_RS07575: ABIE51_RS07575 - FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein, at 1,601,357 to 1,602,040
_RS07575
Group
Condition
ABIE51
_RS07555
ABIE51
_RS07560
ABIE51
_RS07565
ABIE51
_RS07570
ABIE51
_RS07575
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.0
+0.1
N.D.
N.D.
-5.9
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.0
-0.0
N.D.
N.D.
-4.9
stress
R2A with 2-pentyl-furan 32.0526 mM
+0.0
-0.1
N.D.
N.D.
-4.6
carbon source
D-Glucose-6-Phosphate (C)
-0.1
-0.1
N.D.
N.D.
-4.4
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.0
-0.2
N.D.
N.D.
-3.9
carbon source
D-Galactose (C)
+0.0
-0.4
N.D.
N.D.
-3.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.2
+0.1
N.D.
N.D.
-4.0
carbon source
Ying_sugar7 rep A; time point 2
+0.2
+0.1
N.D.
N.D.
-3.7
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.0
+0.1
N.D.
N.D.
-3.5
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.0
-0.0
N.D.
N.D.
-3.2
carbon source
Ying_sugar7 rep C; time point 2
+0.1
+0.1
N.D.
N.D.
-3.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.2
+0.3
N.D.
N.D.
-3.4
carbon source
Glucuronamide (C)
-0.0
-0.4
N.D.
N.D.
-2.6
carbon source
Ying_sugar7 rep B; time point 2
+0.1
+0.2
N.D.
N.D.
-3.3
carbon source
Ying_sugar7 rep C; time point 3
+0.2
+0.1
N.D.
N.D.
-3.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.0
+0.0
N.D.
N.D.
-2.8
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.1
-0.0
N.D.
N.D.
-2.6
carbon source
Ying_OrganicAcid7 rep B; time point 2
-0.0
-0.0
N.D.
N.D.
-2.7
carbon source
Ying_sugar7 rep A; time point 3
+0.3
+0.2
N.D.
N.D.
-3.1
carbon source
Ying_sugar7 rep B; time point 3
+0.2
+0.2
N.D.
N.D.
-3.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.1
-0.1
N.D.
N.D.
-2.5
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.1
-0.1
N.D.
N.D.
-2.5
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.1
-0.2
N.D.
N.D.
-2.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.1
-0.0
N.D.
N.D.
-2.7
carbon source
Ying_sugar7 rep C; time point 1
+0.2
+0.2
N.D.
N.D.
-2.9
carbon source
Ying_OrganicAcid7 rep B; time point 1
+0.1
+0.0
N.D.
N.D.
-2.7
carbon source
Ying_sugar7 rep A; time point 1
+0.2
+0.3
N.D.
N.D.
-2.9
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.1
+0.0
N.D.
N.D.
-2.6
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.1
+0.0
N.D.
N.D.
-2.5
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.1
+0.2
N.D.
N.D.
-2.3
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