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Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS07535 and ABIE51_RS07540 overlap by 1 nucleotides
ABIE51_RS07540 and ABIE51_RS07545 are separated by 422 nucleotides
ABIE51_RS07545 and ABIE51_RS07550 are separated by 323 nucleotides
ABIE51_RS07550 and ABIE51_RS07555 are separated by 309 nucleotides
ABIE51_RS07535: ABIE51_RS07535 - phosphate ABC transporter permease PstA, at 1,592,530 to 1,593,429
_RS07535
ABIE51_RS07540: ABIE51_RS07540 - phosphate ABC transporter permease subunit PstC, at 1,593,429 to 1,594,400
_RS07540
ABIE51_RS07545: ABIE51_RS07545 - phosphate ABC transporter substrate-binding protein PstS, at 1,594,823 to 1,595,920
_RS07545
ABIE51_RS07550: ABIE51_RS07550 - phosphate ABC transporter substrate-binding protein PstS, at 1,596,244 to 1,597,251
_RS07550
ABIE51_RS07555: ABIE51_RS07555 - OprO/OprP family phosphate-selective porin, at 1,597,561 to 1,598,847
_RS07555
Group
Condition
ABIE51
_RS07535
ABIE51
_RS07540
ABIE51
_RS07545
ABIE51
_RS07550
ABIE51
_RS07555
carbon source
D-Maltose (C)
-1.0
-0.3
-0.3
-0.1
-0.0
carbon source
D-Glucuronic Acid (C)
-0.8
-0.2
-0.1
-0.1
+0.0
carbon source
D-Glucose-6-Phosphate (C)
-0.3
-0.2
-0.3
-0.2
-0.1
carbon source
Fumarate (C)
-0.0
-0.6
-0.0
-0.2
-0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.3
-0.3
-0.2
-0.2
-0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.7
-0.1
-0.1
-0.0
-0.1
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.4
-0.5
-0.0
-0.1
-0.0
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.5
-0.2
+0.0
-0.2
-0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.5
-0.2
-0.1
-0.1
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 1
-0.7
-0.2
-0.0
-0.2
+0.1
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.3
-0.2
-0.3
+0.0
-0.1
carbon source
Glucuronamide (C)
+0.2
-0.3
-0.1
-0.3
-0.0
carbon source
Ying_Nucleobase14 rep C; time point 1
-0.6
+0.1
-0.1
-0.0
+0.1
carbon source
propionate (C)
+0.2
-0.5
-0.0
-0.1
-0.1
carbon source
pyruvate (C)
+0.2
-0.3
-0.1
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 2
-0.6
+0.2
-0.0
-0.1
+0.2
carbon source
Ying_all64 rep C; time point 2
-0.5
+0.1
+0.2
-0.1
+0.1
carbon source
L-Glutamine (C)
+0.7
-0.6
-0.2
+0.1
-0.1
carbon source
succinate (C)
+0.5
-0.1
+0.1
-0.5
-0.1
carbon source
L-Tryptophan (C)
+0.7
-0.1
-0.3
-0.0
-0.2
carbon source
2-Deoxy-D-Ribose (C)
+0.8
-0.1
-0.2
-0.1
-0.1
carbon source
L-Malic (C)
+0.9
-0.2
-0.4
+0.1
-0.2
carbon source
L-tyrosine (C)
+1.0
-0.2
-0.2
-0.0
-0.1
carbon source
D-Galactose (C)
+0.6
-0.1
-0.2
-0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.5
-0.2
-0.0
-0.0
+0.2
carbon source
L-Asparagine (C)
+1.0
-0.2
-0.1
-0.2
+0.1
carbon source
D-Maltose (C)
+0.8
+0.1
-0.2
-0.1
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.4
+0.2
+0.1
-0.1
+0.1
carbon source
Fumarate (C)
+1.2
-0.2
+0.1
-0.1
-0.0
carbon source
Ying_all64 rep B; time point 3
+0.5
+0.1
+0.2
+0.1
+0.1
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