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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS07235 and ABIE51_RS07240 are separated by 5 nucleotides
ABIE51_RS07240 and ABIE51_RS07245 are separated by 252 nucleotides
ABIE51_RS07245 and ABIE51_RS07250 overlap by 1 nucleotides
ABIE51_RS07250 and ABIE51_RS07255 are separated by 290 nucleotides
ABIE51_RS07235: ABIE51_RS07235 - tRNA-Ser, at 1,538,851 to 1,538,938
_RS07235
ABIE51_RS07240: ABIE51_RS07240 - tRNA-Ser, at 1,538,944 to 1,539,031
_RS07240
ABIE51_RS07245: ABIE51_RS07245 - lysozyme, at 1,539,284 to 1,539,712
_RS07245
ABIE51_RS07250: ABIE51_RS07250 - hypothetical protein, at 1,539,712 to 1,539,837
_RS07250
ABIE51_RS07255: ABIE51_RS07255 - serine protease, at 1,540,128 to 1,540,709
_RS07255
Group
Condition
ABIE51
_RS07235
ABIE51
_RS07240
ABIE51
_RS07245
ABIE51
_RS07250
ABIE51
_RS07255
carbon source
Ying_AminoAcid20 rep C; time point 3
-1.0
N.D.
-1.7
-1.2
-0.8
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.7
N.D.
-1.5
-0.8
-1.1
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.9
N.D.
-1.6
-0.7
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-1.0
N.D.
-1.0
-1.0
-0.7
carbon source
D-Maltose (C)
+1.3
N.D.
+1.2
+0.5
+0.7
carbon source
acetate (C)
+1.2
N.D.
+0.8
+0.8
+1.2
carbon source
Ying_OrganicAcid7 rep A; time point 1
+0.6
N.D.
+1.3
+1.0
+1.0
carbon source
Ying_Others16 rep C; time point 1
+0.6
N.D.
+2.5
+0.6
+1.0
carbon source
acetate (C)
+1.3
N.D.
+0.8
+1.2
+1.6
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.5
N.D.
+2.1
+1.1
+1.2
carbon source
D-Glucose-6-Phosphate (C)
+1.5
N.D.
+2.2
+0.8
+0.7
carbon source
D-Galactose (C)
+1.7
N.D.
+1.5
+0.8
+1.3
carbon source
Ying_OrganicAcid7 rep A; time point 2
+1.2
N.D.
+2.4
+1.2
+1.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
+1.0
N.D.
+2.8
+1.1
+1.0
carbon source
L-Glutamine (C)
+1.7
N.D.
+1.8
+1.1
+1.5
carbon source
Ying_Nucleobase14 rep B; time point 1
+1.0
N.D.
+2.5
+1.4
+1.2
carbon source
Ying_all64 rep C; time point 2
+1.9
N.D.
+1.4
+2.2
+2.0
carbon source
Ying_Others16 rep A; time point 1
+1.0
N.D.
+3.7
+1.5
+1.5
carbon source
Ying_Others16 rep B; time point 1
+1.1
N.D.
+3.6
+1.8
+1.3
carbon source
Ying_all64 rep C; time point 3
+2.2
N.D.
+2.6
+2.4
+1.9
carbon source
Ying_OrganicAcid7 rep B; time point 1
+2.0
N.D.
+3.2
+2.5
+2.3
carbon source
D-Glucose-6-Phosphate (C)
+2.6
N.D.
+3.7
+2.5
+2.2
carbon source
pyruvate (C)
+3.1
N.D.
+2.9
+2.8
+2.8
carbon source
casaminos (C)
+3.4
N.D.
+2.6
+3.4
+3.2
carbon source
pyruvate (C)
+3.6
N.D.
+2.7
+3.3
+3.3
carbon source
Glucuronamide (C)
+3.4
N.D.
+4.5
+2.8
+3.1
carbon source
casaminos (C)
+3.9
N.D.
+3.2
+3.6
+3.7
carbon source
L-Asparagine (C)
+4.0
N.D.
+3.2
+4.0
+3.9
carbon source
Fumarate (C)
+4.4
N.D.
+4.1
+4.4
+4.4
carbon source
D-Cellobiose (C)
+5.7
N.D.
+6.5
+5.5
+5.2
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