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Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS06855 and ABIE51_RS06860 are separated by 141 nucleotides
ABIE51_RS06860 and ABIE51_RS06865 overlap by 109 nucleotides
ABIE51_RS06865 and ABIE51_RS06870 are separated by 53 nucleotides
ABIE51_RS06870 and ABIE51_RS06875 overlap by 11 nucleotides
ABIE51_RS06855: ABIE51_RS06855 - YkvA family protein, at 1,474,588 to 1,475,226
_RS06855
ABIE51_RS06860: ABIE51_RS06860 - winged helix-turn-helix domain-containing protein, at 1,475,368 to 1,476,426
_RS06860
ABIE51_RS06865: ABIE51_RS06865 - tetratricopeptide repeat protein, at 1,476,318 to 1,477,613
_RS06865
ABIE51_RS06870: ABIE51_RS06870 - hypothetical protein, at 1,477,667 to 1,478,077
_RS06870
ABIE51_RS06875: ABIE51_RS06875 - ribonuclease HII, at 1,478,067 to 1,478,744
_RS06875
Group
Condition
ABIE51
_RS06855
ABIE51
_RS06860
ABIE51
_RS06865
ABIE51
_RS06870
ABIE51
_RS06875
carbon source
D-Cellobiose (C)
-0.3
+0.1
-0.4
-0.2
-0.3
carbon source
L-tyrosine (C)
-0.0
-0.3
-0.3
-0.2
-0.2
carbon source
Ying_Others16 rep B; time point 1
-0.4
-0.3
-0.1
-0.0
-0.0
carbon source
D-Glucuronic Acid (C)
-0.3
-0.1
-0.1
-0.1
-0.1
carbon source
Ying_Others16 rep A; time point 1
-0.1
-0.2
-0.1
-0.2
+0.0
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.1
-0.2
+0.0
-0.1
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.0
-0.2
+0.0
-0.2
-0.3
dmso control
DMSO control
-0.3
-0.0
-0.1
+0.1
-0.4
carbon source
succinate (C)
-0.3
+0.0
-0.1
-0.3
+0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.3
+0.1
-0.1
-0.2
-0.0
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.2
-0.2
+0.1
-0.1
-0.2
carbon source
D-Maltose (C)
-0.0
+0.1
-0.2
+0.1
-0.4
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.1
-0.1
+0.1
+0.0
-0.3
carbon source
L-Asparagine (C)
-0.5
+0.1
-0.1
+0.0
+0.1
r2a no stress control
R2A no stress control
-0.1
-0.2
+0.1
+0.1
-0.3
carbon source
L-Glutamine (C)
-0.5
+0.0
+0.1
-0.0
+0.1
carbon source
propionate (C)
-0.2
+0.1
-0.2
+0.1
-0.2
carbon source
pyruvate (C)
+0.0
-0.1
-0.1
+0.2
-0.2
carbon source
Glucuronamide (C)
-0.3
+0.0
-0.1
+0.3
+0.0
stress
R2A with 3-octanone 2.65516666666667 mM
-0.1
+0.3
+0.0
+0.0
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 2
-0.2
+0.1
+0.0
+0.2
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.2
-0.0
+0.1
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.1
+0.1
+0.1
+0.0
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.1
+0.2
+0.1
+0.2
+0.4
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.4
+0.0
+0.1
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.2
+0.1
+0.3
+0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
+0.1
+0.1
+0.1
+0.2
+0.3
carbon source
Fumarate (C)
+0.1
+0.2
+0.2
+0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.2
+0.3
+0.0
+0.2
+0.3
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.1
+0.3
+0.2
+0.2
+0.3
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