Fitness for 5 genes in Lysobacter sp. OAE881

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500 ntABIE51_RS06455 and ABIE51_RS06460 overlap by 4 nucleotidesABIE51_RS06460 and ABIE51_RS06465 overlap by 4 nucleotidesABIE51_RS06465 and ABIE51_RS06470 overlap by 4 nucleotidesABIE51_RS06470 and ABIE51_RS06475 are separated by 150 nucleotides ABIE51_RS06455: ABIE51_RS06455 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,379,159 to 1,379,872 _RS06455 ABIE51_RS06460: ABIE51_RS06460 - hypothetical protein, at 1,379,869 to 1,380,315 _RS06460 ABIE51_RS06465: ABIE51_RS06465 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,380,312 to 1,380,791 _RS06465 ABIE51_RS06470: ABIE51_RS06470 - tRNA pseudouridine(13) synthase TruD, at 1,380,788 to 1,381,840 _RS06470 ABIE51_RS06475: ABIE51_RS06475 - hypothetical protein, at 1,381,991 to 1,382,233 _RS06475
Group Condition ABIE51_RS06455 ABIE51_RS06460 ABIE51_RS06465 ABIE51_RS06470 ABIE51_RS06475
agar plate interaction control Parafilmed volatile R2A_HEPES agar plate with no fungus N.D. -0.8 N.D. -0.1 -0.1
dmso control DMSO control N.D. -0.5 N.D. -0.3 -0.1
stress R2A with 2-pentyl-furan 21.3684 mM N.D. -0.5 N.D. -0.3 -0.0
carbon source Ying_Others16 rep B; time point 1 N.D. +0.1 N.D. -0.6 -0.3
carbon source Ying_all64 rep A; time point 3 N.D. -0.7 N.D. -0.0 +0.0
stress R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM N.D. -0.7 N.D. +0.1 +0.0
stress R2A with 1-octen-3-ol 1.08545883333333 mM N.D. -0.8 N.D. +0.2 +0.0
stress R2A with 1-octen-3-ol 0.904549 mM N.D. -0.5 N.D. +0.1 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 1 N.D. +0.3 N.D. -0.4 -0.1
carbon source Ying_Others16 rep A; time point 1 N.D. +0.6 N.D. -0.3 -0.1
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.7 N.D. -0.4 -0.2
carbon source D-Maltose (C) N.D. +0.5 N.D. -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media N.D. +0.6 N.D. -0.0 -0.1
carbon source Ying_Nucleobase14 rep B; time point 1 N.D. +0.6 N.D. -0.2 +0.1
carbon source D-Maltose (C) N.D. +0.7 N.D. -0.2 +0.1
carbon source L-tyrosine (C) N.D. +0.6 N.D. -0.1 +0.1
agar plate interaction control Parafilmed volatile R2A_HEPES agar plate with no fungus N.D. +0.7 N.D. -0.1 +0.0
carbon source D-Cellobiose (C) N.D. +0.6 N.D. -0.0 +0.1
carbon source acetate (C) N.D. +0.6 N.D. +0.2 -0.1
carbon source D-Galactose (C) N.D. +0.9 N.D. -0.1 -0.1
carbon source pyruvate (C) N.D. +0.9 N.D. -0.1 -0.1
stress R2A with 3-octanone 5.31033333333333 mM N.D. +0.6 N.D. -0.1 +0.1
carbon source succinate (C) N.D. +0.5 N.D. +0.3 -0.1
carbon source Fumarate (C) N.D. +0.8 N.D. -0.1 -0.0
stress R2A with 3-octanone 1.77016666666667 mM N.D. +1.0 N.D. -0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media N.D. +0.6 N.D. +0.1 +0.1
stress R2A with 3-octanone 2.65516666666667 mM N.D. +0.6 N.D. +0.1 +0.1
carbon source Ying_all64 rep B; time point 3 N.D. +0.7 N.D. +0.1 +0.0
carbon source D-Glucuronic Acid (C) N.D. +0.8 N.D. +0.0 +0.0
stress R2A with 2-pentyl-furan 32.0526 mM N.D. +0.9 N.D. -0.2 +0.1
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