Fitness for 5 genes in Lysobacter sp. OAE881

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500 ntABIE51_RS05545 and ABIE51_RS05550 are separated by 126 nucleotidesABIE51_RS05550 and ABIE51_RS05555 are separated by 130 nucleotidesABIE51_RS05555 and ABIE51_RS05560 overlap by 4 nucleotidesABIE51_RS05560 and ABIE51_RS05565 are separated by 254 nucleotides ABIE51_RS05545: ABIE51_RS05545 - RNA polymerase sigma factor, at 1,197,425 to 1,197,940 _RS05545 ABIE51_RS05550: ABIE51_RS05550 - hypothetical protein, at 1,198,067 to 1,198,423 _RS05550 ABIE51_RS05555: ABIE51_RS05555 - NAD(P) transhydrogenase subunit alpha, at 1,198,554 to 1,198,865 _RS05555 ABIE51_RS05560: ABIE51_RS05560 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 1,198,862 to 1,200,253 _RS05560 ABIE51_RS05565: ABIE51_RS05565 - hypothetical protein, at 1,200,508 to 1,200,990 _RS05565
Group Condition ABIE51_RS05545 ABIE51_RS05550 ABIE51_RS05555 ABIE51_RS05560 ABIE51_RS05565
carbon source L-Malic (C) +0.2 -4.4 +1.1 -0.1 +0.4
carbon source D-Cellobiose (C) -0.2 -0.4 -1.3 -0.2 -0.3
agar plate interaction control Parafilmed volatile R2A agar plate with no fungus +0.0 -2.9 +0.2 +0.1 +0.2
agar plate interaction control Parafilmed volatile R2A_HEPES agar plate with no fungus +0.2 -2.2 -0.1 +0.0 -0.2
carbon source D-Galactose (C) +0.2 +0.7 -2.5 -0.5 +0.2
carbon source 2-Deoxy-D-Ribose (C) -0.2 -1.1 -0.2 -0.2 -0.1
stress R2A with 3-octanone 2.65516666666667 mM -0.5 -0.6 -0.9 +0.3 +0.0
carbon source Ying_all64 rep B; time point 3 -0.4 -1.7 +0.3 +0.1 -0.0
carbon source Ying_sugar7 rep C; time point 2 +0.1 +0.3 -1.6 -0.3 -0.2
agar plate interaction control Parafilmed volatile R2A agar plate with no fungus -0.2 -1.8 +0.2 +0.1 +0.1
carbon source pyruvate (C) +0.3 -0.4 -1.0 -0.1 -0.1
carbon source L-Tryptophan (C) -0.1 -0.3 -1.1 +0.0 +0.2
carbon source Ying_AminoAcid20 rep A; time point 3 -0.2 -1.4 +0.3 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media -0.3 -1.5 +0.8 -0.3 -0.1
agar plate interaction control Parafilmed volatile R2A_HEPES agar plate with no fungus -0.2 -1.3 +0.6 -0.0 -0.2
carbon source Ying_sugar7 rep A; time point 2 +0.1 +0.5 -1.1 -0.2 -0.0
carbon source Ying_AminoAcid20 rep C; time point 3 -0.6 -0.5 +0.2 +0.2 +0.2
carbon source propionate (C) -0.7 -0.4 +0.8 -0.0 -0.1
carbon source pyruvate (C) -0.2 -1.1 +0.6 +0.1 +0.2
carbon source Ying_Others16 rep A; time point 1 -0.3 +0.7 -0.9 +0.1 +0.1
carbon source D-Glucuronic Acid (C) -0.2 -1.8 +1.4 +0.0 +0.3
carbon source Fumarate (C) +0.2 +0.4 -1.0 -0.1 +0.3
carbon source Ying_all64 rep A; time point 1 +0.2 +0.6 -0.9 -0.1 -0.1
stress R2A with 3-octanone 2.65516666666667 mM +0.0 +0.6 -1.0 -0.1 +0.1
carbon source Ying_Nucleobase14 rep B; time point 1 -0.5 +0.8 -0.5 +0.0 +0.1
carbon source succinate (C) -0.3 +0.8 -0.0 +0.2 -0.7
stress R2A with 1-octen-3-ol 0.904549 mM -0.4 -0.6 +0.8 +0.2 +0.2
carbon source Ying_OrganicAcid7 rep C; time point 1 +0.1 +1.1 -0.5 -0.1 -0.1
dmso control DMSO control +0.2 -0.5 +0.6 +0.2 +0.3
carbon source D-Maltose (C) +0.1 +0.5 +0.9 -0.1 +0.4
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