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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS05075 and ABIE51_RS05080 overlap by 26 nucleotides
ABIE51_RS05080 and ABIE51_RS05085 are separated by 162 nucleotides
ABIE51_RS05085 and ABIE51_RS05090 are separated by 72 nucleotides
ABIE51_RS05090 and ABIE51_RS05095 are separated by 9 nucleotides
ABIE51_RS05075: ABIE51_RS05075 - protein TolA, at 1,098,247 to 1,099,101
_RS05075
ABIE51_RS05080: ABIE51_RS05080 - hypothetical protein, at 1,099,076 to 1,099,219
_RS05080
ABIE51_RS05085: ABIE51_RS05085 - Tol-Pal system beta propeller repeat protein TolB, at 1,099,382 to 1,100,698
_RS05085
ABIE51_RS05090: ABIE51_RS05090 - peptidoglycan-associated lipoprotein Pal, at 1,100,771 to 1,101,280
_RS05090
ABIE51_RS05095: ABIE51_RS05095 - tol-pal system protein YbgF, at 1,101,290 to 1,102,093
_RS05095
Group
Condition
ABIE51
_RS05075
ABIE51
_RS05080
ABIE51
_RS05085
ABIE51
_RS05090
ABIE51
_RS05095
carbon source
Ying_OrganicAcid7 rep B; time point 2
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
Ying_OrganicAcid7 rep A; time point 2
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
Ying_AminoAcid20 rep B; time point 2
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_AminoAcid20 rep A; time point 3
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_OrganicAcid7 rep C; time point 2
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 3
N.D.
N.D.
N.D.
N.D.
-0.2
stress
R2A with 2-pentyl-furan 10.6842 mM
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 2
N.D.
N.D.
N.D.
N.D.
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
N.D.
N.D.
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_AminoAcid20 rep A; time point 1
N.D.
N.D.
N.D.
N.D.
-0.2
stress
R2A with 2-pentyl-furan 32.0526 mM
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Ying_sugar7 rep C; time point 3
N.D.
N.D.
N.D.
N.D.
-0.2
stress
R2A with 3-octanone 5.31033333333333 mM
N.D.
N.D.
N.D.
N.D.
-0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
N.D.
N.D.
N.D.
N.D.
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
N.D.
N.D.
N.D.
N.D.
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 2
N.D.
N.D.
N.D.
N.D.
-0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
N.D.
N.D.
N.D.
N.D.
-0.1
carbon source
Fumarate (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
D-Cellobiose (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Glucuronamide (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Ying_all64 rep A; time point 3
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Ying_all64 rep A; time point 1
N.D.
N.D.
N.D.
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
Ying_Nucleobase14 rep B; time point 1
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
2-Deoxy-D-Ribose (C)
N.D.
N.D.
N.D.
N.D.
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
N.D.
N.D.
N.D.
N.D.
+0.2
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
Fumarate (C)
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
D-Glucuronic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.3
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