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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS05000 and ABIE51_RS05005 are separated by 376 nucleotides
ABIE51_RS05005 and ABIE51_RS05010 are separated by 214 nucleotides
ABIE51_RS05010 and ABIE51_RS05015 are separated by 106 nucleotides
ABIE51_RS05015 and ABIE51_RS05020 are separated by 2 nucleotides
ABIE51_RS05000: ABIE51_RS05000 - ABC-F family ATP-binding cassette domain-containing protein, at 1,084,159 to 1,086,003
_RS05000
ABIE51_RS05005: ABIE51_RS05005 - PhzF family phenazine biosynthesis isomerase, at 1,086,380 to 1,087,276
_RS05005
ABIE51_RS05010: ABIE51_RS05010 - zinc ribbon domain-containing protein, at 1,087,491 to 1,087,796
_RS05010
ABIE51_RS05015: ABIE51_RS05015 - aspartate--tRNA ligase, at 1,087,903 to 1,089,702
_RS05015
ABIE51_RS05020: ABIE51_RS05020 - DNA primase, at 1,089,705 to 1,089,980
_RS05020
Group
Condition
ABIE51
_RS05000
ABIE51
_RS05005
ABIE51
_RS05010
ABIE51
_RS05015
ABIE51
_RS05020
carbon source
Fumarate (C)
-0.3
-3.4
-0.3
N.D.
N.D.
carbon source
D-Galactose (C)
-0.6
-0.7
-0.3
N.D.
N.D.
carbon source
L-Asparagine (C)
-1.4
+0.1
-0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.3
-1.2
+0.1
N.D.
N.D.
carbon source
L-tyrosine (C)
-0.7
-1.0
+0.5
N.D.
N.D.
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.1
-0.6
-0.5
N.D.
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
-0.9
-0.2
-0.0
N.D.
N.D.
carbon source
Fumarate (C)
+0.2
-2.1
+0.8
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
+0.0
-1.1
-0.0
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.4
-0.8
-0.6
N.D.
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.1
-1.2
+0.2
N.D.
N.D.
carbon source
propionate (C)
-1.7
+0.9
+0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
+0.5
-1.3
+0.1
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 1
-0.3
-0.5
+0.4
N.D.
N.D.
carbon source
pyruvate (C)
-1.0
+0.8
-0.1
N.D.
N.D.
carbon source
Ying_Others16 rep B; time point 1
+0.4
-0.7
+0.2
N.D.
N.D.
carbon source
D-Maltose (C)
+0.0
-1.1
+0.9
N.D.
N.D.
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.7
+0.8
-0.2
N.D.
N.D.
carbon source
D-Maltose (C)
-0.8
+0.8
-0.1
N.D.
N.D.
carbon source
D-Cellobiose (C)
-0.9
+0.8
+0.2
N.D.
N.D.
carbon source
Ying_Others16 rep C; time point 1
-0.2
+0.9
-0.1
N.D.
N.D.
r2a no stress control
R2A no stress control
-0.4
+1.0
-0.1
N.D.
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.2
+0.9
-0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
+0.1
+0.7
+0.4
N.D.
N.D.
dmso control
DMSO control
+0.5
+0.6
+0.1
N.D.
N.D.
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.7
+0.7
+0.1
N.D.
N.D.
carbon source
D-Glucose-6-Phosphate (C)
+0.4
+1.0
+0.4
N.D.
N.D.
carbon source
succinate (C)
+0.2
+1.2
+0.6
N.D.
N.D.
carbon source
pyruvate (C)
+0.7
+0.9
+0.5
N.D.
N.D.
carbon source
L-Malic (C)
+1.0
+1.4
+0.8
N.D.
N.D.
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