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Protein
Homologs
Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS03230 and ABIE51_RS03235 are separated by 797 nucleotides
ABIE51_RS03235 and ABIE51_RS03240 overlap by 4 nucleotides
ABIE51_RS03240 and ABIE51_RS03245 are separated by 228 nucleotides
ABIE51_RS03245 and ABIE51_RS03250 overlap by 4 nucleotides
ABIE51_RS03230: ABIE51_RS03230 - efflux RND transporter periplasmic adaptor subunit, at 714,944 to 716,197
_RS03230
ABIE51_RS03235: ABIE51_RS03235 - leucyl aminopeptidase family protein, at 716,995 to 718,374
_RS03235
ABIE51_RS03240: ABIE51_RS03240 - HAD-IA family hydrolase, at 718,371 to 719,087
_RS03240
ABIE51_RS03245: ABIE51_RS03245 - AI-2E family transporter, at 719,316 to 720,449
_RS03245
ABIE51_RS03250: ABIE51_RS03250 - hypothetical protein, at 720,446 to 720,940
_RS03250
Group
Condition
ABIE51
_RS03230
ABIE51
_RS03235
ABIE51
_RS03240
ABIE51
_RS03245
ABIE51
_RS03250
carbon source
Glucuronamide (C)
+0.5
+0.0
-0.1
-0.0
-1.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.4
-0.6
-0.1
-0.3
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 1
-0.3
-0.3
-0.2
-0.0
-0.3
carbon source
D-Maltose (C)
-0.1
-0.1
-0.2
-0.0
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.2
-0.4
-0.1
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.2
-0.3
+0.0
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.4
-0.3
+0.1
-0.2
-0.1
carbon source
succinate (C)
+0.0
-0.2
-0.2
-0.1
-0.4
carbon source
casaminos (C)
+0.1
-0.5
+0.0
-0.1
-0.4
carbon source
L-Glutamine (C)
+0.3
-0.1
-0.1
-0.1
-0.8
carbon source
D-Cellobiose (C)
-0.0
+0.1
-0.3
-0.2
-0.3
carbon source
D-Maltose (C)
-0.4
-0.4
-0.1
-0.0
+0.2
carbon source
Ying_OrganicAcid7 rep C; time point 2
-0.1
-0.5
-0.1
-0.2
+0.2
stress
R2A with 3-octanone 5.31033333333333 mM
+0.1
-0.3
-0.0
-0.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.1
-0.3
+0.1
-0.2
-0.2
r2a no stress control
R2A no stress control
+0.1
-0.3
-0.1
-0.0
-0.4
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.2
-0.1
+0.1
+0.0
-0.5
carbon source
casaminos (C)
+0.1
-0.5
-0.0
-0.1
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 2
-0.2
-0.2
-0.1
-0.2
+0.2
stress
R2A with 2-pentyl-furan 10.6842 mM
+0.2
-0.3
-0.1
-0.0
-0.3
carbon source
Fumarate (C)
+0.2
-0.0
+0.0
+0.1
-0.8
carbon source
Ying_all64 rep B; time point 3
+0.3
-0.2
-0.0
-0.2
-0.2
carbon source
Ying_sugar7 rep B; time point 3
+0.0
-0.5
-0.0
-0.1
+0.3
carbon source
Ying_OrganicAcid7 rep A; time point 2
+0.1
-0.4
-0.2
-0.1
+0.3
carbon source
Ying_sugar7 rep B; time point 2
-0.3
-0.3
+0.1
-0.0
+0.2
carbon source
Ying_sugar7 rep A; time point 2
-0.1
-0.3
-0.1
-0.0
+0.4
carbon source
Ying_sugar7 rep A; time point 3
-0.1
-0.4
+0.2
-0.0
+0.3
carbon source
Ying_Others16 rep A; time point 1
-0.0
-0.2
-0.0
-0.3
+0.5
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.2
-0.2
-0.2
+0.0
+0.3
carbon source
L-Malic (C)
+0.4
-0.2
+0.1
+0.1
+0.4
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