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Cofit
Fitness for 5 genes in
Lysobacter sp. OAE881
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500 nt
ABIE51_RS03135 and ABIE51_RS03140 overlap by 4 nucleotides
ABIE51_RS03140 and ABIE51_RS03145 are separated by 1 nucleotides
ABIE51_RS03145 and ABIE51_RS03150 are separated by 197 nucleotides
ABIE51_RS03150 and ABIE51_RS03155 are separated by 149 nucleotides
ABIE51_RS03135: ABIE51_RS03135 - rod shape-determining protein MreC, at 693,981 to 695,117
_RS03135
ABIE51_RS03140: ABIE51_RS03140 - rod shape-determining protein MreD, at 695,114 to 695,599
_RS03140
ABIE51_RS03145: ABIE51_RS03145 - penicillin-binding protein 2, at 695,601 to 697,457
_RS03145
ABIE51_RS03150: ABIE51_RS03150 - rod shape-determining protein RodA, at 697,655 to 698,767
_RS03150
ABIE51_RS03155: ABIE51_RS03155 - lytic murein transglycosylase B, at 698,917 to 700,086
_RS03155
Group
Condition
ABIE51
_RS03135
ABIE51
_RS03140
ABIE51
_RS03145
ABIE51
_RS03150
ABIE51
_RS03155
carbon source
Ying_AminoAcid20 rep B; time point 3
-2.2
N.D.
N.D.
N.D.
-3.0
carbon source
Ying_OrganicAcid7 rep B; time point 2
-1.9
N.D.
N.D.
N.D.
-3.2
carbon source
Ying_AminoAcid20 rep A; time point 2
-1.9
N.D.
N.D.
N.D.
-3.2
carbon source
Ying_AminoAcid20 rep C; time point 3
-2.1
N.D.
N.D.
N.D.
-2.8
carbon source
Ying_sugar7 rep B; time point 3
-1.5
N.D.
N.D.
N.D.
-3.3
carbon source
Ying_AminoAcid20 rep B; time point 2
-1.8
N.D.
N.D.
N.D.
-3.0
carbon source
Ying_AminoAcid20 rep A; time point 3
-1.9
N.D.
N.D.
N.D.
-2.9
carbon source
Ying_sugar7 rep A; time point 3
-1.5
N.D.
N.D.
N.D.
-3.2
carbon source
Ying_AminoAcid20 rep B; time point 1
-1.7
N.D.
N.D.
N.D.
-2.9
carbon source
Ying_AminoAcid20 rep A; time point 1
-2.0
N.D.
N.D.
N.D.
-2.7
carbon source
Ying_sugar7 rep C; time point 2
-1.4
N.D.
N.D.
N.D.
-3.1
carbon source
Ying_sugar7 rep C; time point 3
-1.2
N.D.
N.D.
N.D.
-3.2
carbon source
Ying_AminoAcid20 rep C; time point 2
-1.4
N.D.
N.D.
N.D.
-3.0
carbon source
Ying_sugar7 rep A; time point 2
-1.2
N.D.
N.D.
N.D.
-3.2
carbon source
Ying_all64 rep B; time point 2
-1.6
N.D.
N.D.
N.D.
-2.7
carbon source
Ying_sugar7 rep B; time point 2
-1.3
N.D.
N.D.
N.D.
-3.0
carbon source
Ying_AminoAcid20 rep C; time point 1
-1.4
N.D.
N.D.
N.D.
-2.8
carbon source
Ying_OrganicAcid7 rep A; time point 2
-1.5
N.D.
N.D.
N.D.
-2.6
carbon source
Ying_all64 rep B; time point 3
-1.7
N.D.
N.D.
N.D.
-2.4
carbon source
Ying_all64 rep C; time point 3
-1.4
N.D.
N.D.
N.D.
-2.7
carbon source
Ying_all64 rep C; time point 2
-1.4
N.D.
N.D.
N.D.
-2.7
carbon source
Ying_OrganicAcid7 rep C; time point 2
-1.4
N.D.
N.D.
N.D.
-2.6
carbon source
Ying_all64 rep A; time point 2
-1.4
N.D.
N.D.
N.D.
-2.5
carbon source
Ying_sugar7 rep A; time point 1
-1.2
N.D.
N.D.
N.D.
-2.6
carbon source
Ying_all64 rep A; time point 3
-1.4
N.D.
N.D.
N.D.
-2.5
carbon source
Ying_all64 rep C; time point 1
-1.4
N.D.
N.D.
N.D.
-2.3
carbon source
Ying_all64 rep A; time point 1
-1.4
N.D.
N.D.
N.D.
-2.2
carbon source
Ying_all64 rep B; time point 1
-1.2
N.D.
N.D.
N.D.
-2.3
carbon source
Ying_sugar7 rep C; time point 1
-0.9
N.D.
N.D.
N.D.
-2.5
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-1.3
N.D.
N.D.
N.D.
-1.2
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