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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS02865 and ABIE51_RS02870 are separated by 106 nucleotides
ABIE51_RS02870 and ABIE51_RS02875 are separated by 98 nucleotides
ABIE51_RS02875 and ABIE51_RS02880 are separated by 215 nucleotides
ABIE51_RS02880 and ABIE51_RS02885 are separated by 258 nucleotides
ABIE51_RS02865: ABIE51_RS02865 - rhamnogalacturonan acetylesterase, at 634,295 to 635,041
_RS02865
ABIE51_RS02870: ABIE51_RS02870 - pectinesterase family protein, at 635,148 to 636,191
_RS02870
ABIE51_RS02875: ABIE51_RS02875 - pectate lyase, at 636,290 to 637,633
_RS02875
ABIE51_RS02880: ABIE51_RS02880 - TonB-dependent receptor, at 637,849 to 640,692
_RS02880
ABIE51_RS02885: ABIE51_RS02885 - sugar kinase, at 640,951 to 641,958
_RS02885
Group
Condition
ABIE51
_RS02865
ABIE51
_RS02870
ABIE51
_RS02875
ABIE51
_RS02880
ABIE51
_RS02885
carbon source
L-Malic (C)
-1.2
+0.0
-0.0
-0.2
-0.3
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.1
-0.2
-0.0
-0.3
-0.8
stress
R2A with 1-octen-3-ol 1.3568235 mM
-0.1
-0.3
-0.5
-0.2
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.3
-0.1
-0.4
-0.1
-0.3
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.2
-0.4
-0.3
-0.1
-0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.2
-0.2
-0.2
-0.0
-0.4
stress
R2A with 3-octanone 5.31033333333333 mM
-0.4
-0.0
-0.4
-0.1
-0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.4
+0.1
-0.4
-0.1
-0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.2
-0.4
-0.2
-0.2
-0.3
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.4
+0.0
+0.2
-0.1
-0.5
carbon source
Ying_sugar7 rep B; time point 3
-0.2
-0.2
+0.2
-0.1
-0.4
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.2
-0.4
-0.0
-0.2
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.2
-0.2
+0.1
-0.3
-0.4
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
-0.2
+0.1
-0.1
-0.5
carbon source
Glucuronamide (C)
+0.6
-0.1
-0.6
-0.2
+0.2
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
-0.2
+0.2
-0.1
-0.3
carbon source
L-Asparagine (C)
+0.4
-0.5
-0.3
+0.1
+0.3
carbon source
D-Maltose (C)
+0.3
-0.2
-0.3
-0.0
+0.3
carbon source
Ying_AminoAcid20 rep B; time point 2
+0.3
+0.1
+0.4
-0.3
-0.3
r2a no stress control
R2A no stress control
+0.2
-0.1
+0.4
-0.0
-0.2
carbon source
D-Glucuronic Acid (C)
+0.4
-0.2
-0.2
+0.1
+0.3
carbon source
Fumarate (C)
+0.7
-0.4
+0.2
+0.3
-0.3
carbon source
Ying_all64 rep B; time point 1
+0.4
-0.3
+0.2
+0.0
+0.2
carbon source
L-Glutamine (C)
+0.7
-0.2
+0.0
+0.1
+0.0
stress
R2A with 3-octanone 1.77016666666667 mM
+0.2
+0.1
-0.1
-0.1
+0.6
carbon source
Ying_OrganicAcid7 rep A; time point 1
+0.5
-0.0
+0.4
+0.0
-0.1
carbon source
D-Cellobiose (C)
+0.3
+0.3
-0.2
+0.1
+0.3
carbon source
D-Glucose-6-Phosphate (C)
+0.5
-0.3
+0.2
+0.2
+0.3
carbon source
Ying_Nucleobase14 rep B; time point 1
+0.4
+0.1
+0.4
+0.1
-0.1
carbon source
L-tyrosine (C)
+0.5
+0.4
+0.5
+0.1
+0.4
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