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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS02735 and ABIE51_RS02740 are separated by 52 nucleotides
ABIE51_RS02740 and ABIE51_RS02745 are separated by 230 nucleotides
ABIE51_RS02745 and ABIE51_RS02750 are separated by 100 nucleotides
ABIE51_RS02750 and ABIE51_RS02755 are separated by 102 nucleotides
ABIE51_RS02735: ABIE51_RS02735 - gamma-glutamylcyclotransferase family protein, at 604,136 to 604,471
_RS02735
ABIE51_RS02740: ABIE51_RS02740 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 604,524 to 606,278
_RS02740
ABIE51_RS02745: ABIE51_RS02745 - hypothetical protein, at 606,509 to 606,790
_RS02745
ABIE51_RS02750: ABIE51_RS02750 - peptide-methionine (S)-S-oxide reductase MsrA, at 606,891 to 607,397
_RS02750
ABIE51_RS02755: ABIE51_RS02755 - M20/M25/M40 family metallo-hydrolase, at 607,500 to 609,044
_RS02755
Group
Condition
ABIE51
_RS02735
ABIE51
_RS02740
ABIE51
_RS02745
ABIE51
_RS02750
ABIE51
_RS02755
carbon source
Ying_Others16 rep B; time point 1
-2.1
+0.2
-0.6
+0.0
+0.0
carbon source
succinate (C)
-1.7
+0.1
-0.5
-0.1
-0.0
carbon source
L-tyrosine (C)
-0.6
-0.2
-0.5
+0.1
-0.1
stress
R2A with 3-octanone 5.31033333333333 mM
-1.3
+0.0
+0.0
-0.0
+0.1
carbon source
D-Glucose-6-Phosphate (C)
-0.9
-0.0
-0.2
+0.2
+0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.1
-0.2
-0.6
-0.0
-0.0
carbon source
D-Glucuronic Acid (C)
-0.7
+0.0
-0.4
+0.2
-0.0
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.4
+0.0
-0.4
+0.1
+0.1
stress
R2A with 3-octanone 2.65516666666667 mM
-0.7
+0.0
+0.1
-0.1
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.1
-0.1
-0.6
+0.1
-0.1
carbon source
2-Deoxy-D-Ribose (C)
+0.2
-0.0
-0.6
-0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.5
-0.1
-0.2
+0.3
+0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.3
+0.1
-0.4
+0.1
+0.0
carbon source
Ying_OrganicAcid7 rep B; time point 1
-0.7
-0.0
+0.3
+0.1
-0.1
carbon source
D-Galactose (C)
+0.3
-0.4
-0.3
+0.1
+0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.6
-0.1
+0.2
+0.2
+0.1
carbon source
L-Asparagine (C)
-0.1
-0.1
-0.4
+0.1
+0.2
carbon source
Ying_all64 rep C; time point 3
-0.4
-0.1
+0.1
+0.3
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
-0.6
+0.0
+0.3
+0.2
+0.0
carbon source
Ying_Others16 rep C; time point 1
+0.2
-0.1
-0.5
+0.2
+0.1
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.5
+0.0
+0.4
+0.1
+0.0
carbon source
L-Malic (C)
+0.5
+0.1
-0.4
+0.1
+0.0
carbon source
D-Cellobiose (C)
-1.0
+0.1
+0.4
+0.6
+0.2
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-0.5
+0.0
+0.6
+0.2
+0.1
carbon source
L-Glutamine (C)
+0.5
+0.1
-0.3
+0.0
+0.1
carbon source
Glucuronamide (C)
+0.6
+0.0
-0.4
+0.2
+0.1
r2a no stress control
R2A no stress control
+0.3
+0.2
+0.3
-0.1
+0.2
carbon source
Fumarate (C)
+0.7
+0.3
-0.2
+0.0
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.4
+0.3
+0.1
-0.0
+0.1
carbon source
Ying_sugar7 rep A; time point 2
+0.5
+0.1
+0.1
+0.3
+0.0
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