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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS01440 and ABIE51_RS01445 are separated by 39 nucleotides
ABIE51_RS01445 and ABIE51_RS01450 are separated by 170 nucleotides
ABIE51_RS01450 and ABIE51_RS01455 are separated by 100 nucleotides
ABIE51_RS01455 and ABIE51_RS01460 are separated by 306 nucleotides
ABIE51_RS01440: ABIE51_RS01440 - P-II family nitrogen regulator, at 314,909 to 315,247
_RS01440
ABIE51_RS01445: ABIE51_RS01445 - TorF family putative porin, at 315,287 to 316,054
_RS01445
ABIE51_RS01450: ABIE51_RS01450 - GNAT family N-acetyltransferase, at 316,225 to 316,689
_RS01450
ABIE51_RS01455: ABIE51_RS01455 - type I glutamate--ammonia ligase, at 316,790 to 318,199
_RS01455
ABIE51_RS01460: ABIE51_RS01460 - undecaprenyl-diphosphate phosphatase, at 318,506 to 319,360
_RS01460
Group
Condition
ABIE51
_RS01440
ABIE51
_RS01445
ABIE51
_RS01450
ABIE51
_RS01455
ABIE51
_RS01460
stress
R2A with 3-octanone 5.31033333333333 mM
-0.8
-0.1
-0.2
N.D.
N.D.
stress
R2A with 3-octanone 5.31033333333333 mM
-1.0
-0.2
+0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.9
-0.1
-0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.6
-0.1
-0.4
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
-1.1
+0.0
+0.1
N.D.
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.3
-0.1
-0.5
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
-0.7
-0.1
-0.1
N.D.
N.D.
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.5
-0.1
-0.3
N.D.
N.D.
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.8
+0.3
+0.2
N.D.
N.D.
carbon source
Fumarate (C)
+0.5
-0.1
-0.4
N.D.
N.D.
carbon source
D-Cellobiose (C)
+0.8
-0.2
-0.3
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.8
-0.1
-0.2
N.D.
N.D.
carbon source
Ying_all64 rep B; time point 2
+0.8
-0.1
-0.1
N.D.
N.D.
carbon source
Ying_AminoAcid20 rep C; time point 2
+0.8
-0.1
-0.0
N.D.
N.D.
carbon source
casaminos (C)
+0.9
-0.1
-0.1
N.D.
N.D.
carbon source
succinate (C)
+1.5
-0.5
-0.1
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 1
+0.6
+0.2
+0.1
N.D.
N.D.
carbon source
Ying_all64 rep C; time point 3
+0.6
+0.1
+0.2
N.D.
N.D.
carbon source
Ying_all64 rep C; time point 2
+1.1
+0.0
-0.1
N.D.
N.D.
carbon source
D-Maltose (C)
+1.0
+0.2
-0.2
N.D.
N.D.
carbon source
L-Tryptophan (C)
+1.0
+0.1
+0.0
N.D.
N.D.
carbon source
D-Maltose (C)
+0.9
+0.3
-0.1
N.D.
N.D.
carbon source
Ying_all64 rep B; time point 3
+0.8
+0.2
+0.2
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 1
+1.2
+0.2
+0.2
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 2
+1.6
+0.4
+0.2
N.D.
N.D.
carbon source
Ying_sugar7 rep B; time point 2
+1.7
+0.5
+0.2
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 2
+1.9
+0.3
+0.2
N.D.
N.D.
carbon source
Ying_sugar7 rep A; time point 3
+1.7
+0.8
+0.6
N.D.
N.D.
carbon source
Ying_sugar7 rep C; time point 3
+2.1
+0.8
+0.4
N.D.
N.D.
carbon source
Ying_sugar7 rep B; time point 3
+1.9
+1.0
+0.6
N.D.
N.D.
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