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Fitness for 5 genes in
Lysobacter sp. OAE881
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE51_RS00805 and ABIE51_RS00810 are separated by 54 nucleotides
ABIE51_RS00810 and ABIE51_RS00815 are separated by 43 nucleotides
ABIE51_RS00815 and ABIE51_RS00820 are separated by 118 nucleotides
ABIE51_RS00820 and ABIE51_RS00825 are separated by 111 nucleotides
ABIE51_RS00805: ABIE51_RS00805 - biopolymer transporter ExbD, at 169,257 to 169,676
_RS00805
ABIE51_RS00810: ABIE51_RS00810 - pyridoxine 5'-phosphate synthase, at 169,731 to 170,501
_RS00810
ABIE51_RS00815: ABIE51_RS00815 - hypothetical protein, at 170,545 to 171,048
_RS00815
ABIE51_RS00820: ABIE51_RS00820 - hypothetical protein, at 171,167 to 171,430
_RS00820
ABIE51_RS00825: ABIE51_RS00825 - cardiolipin synthase, at 171,542 to 172,979
_RS00825
Group
Condition
ABIE51
_RS00805
ABIE51
_RS00810
ABIE51
_RS00815
ABIE51
_RS00820
ABIE51
_RS00825
carbon source
L-Malic (C)
-0.6
N.D.
-0.1
N.D.
-0.0
carbon source
Glucuronamide (C)
-0.5
N.D.
-0.2
N.D.
+0.1
carbon source
L-Asparagine (C)
-0.4
N.D.
-0.0
N.D.
+0.0
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.5
N.D.
+0.0
N.D.
+0.1
carbon source
Ying_sugar7 rep A; time point 2
-0.2
N.D.
-0.1
N.D.
-0.0
r2a no stress control
R2A no stress control
-0.3
N.D.
-0.0
N.D.
+0.0
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.5
N.D.
+0.0
N.D.
+0.1
carbon source
D-Maltose (C)
-0.1
N.D.
-0.3
N.D.
+0.1
carbon source
Ying_OrganicAcid7 rep C; time point 2
-0.3
N.D.
+0.0
N.D.
-0.0
carbon source
Ying_all64 rep C; time point 1
-0.3
N.D.
+0.0
N.D.
+0.0
agar plate interaction control
Parafilmed volatile R2A_HEPES agar plate with no fungus
-0.4
N.D.
+0.2
N.D.
+0.0
r2a no stress control
R2A no stress control
-0.3
N.D.
+0.1
N.D.
+0.0
stress
R2A with 2-pentyl-furan 10.6842 mM
-0.3
N.D.
-0.0
N.D.
+0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.3
N.D.
+0.1
N.D.
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 2
-0.3
N.D.
+0.1
N.D.
+0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
-0.2
N.D.
+0.0
N.D.
+0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.2
N.D.
-0.0
N.D.
+0.1
stress
R2A with 2-pentyl-furan 32.0526 mM
-0.3
N.D.
+0.0
N.D.
+0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.2
N.D.
+0.1
N.D.
+0.1
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.2
N.D.
+0.1
N.D.
+0.1
carbon source
L-Tryptophan (C)
+0.2
N.D.
-0.1
N.D.
-0.1
carbon source
Ying_all64 rep A; time point 3
+0.2
N.D.
-0.1
N.D.
+0.0
agar plate interaction control
Parafilmed volatile R2A agar plate with no fungus
+0.2
N.D.
+0.0
N.D.
-0.0
carbon source
casaminos (C)
+0.2
N.D.
-0.0
N.D.
+0.1
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.3
N.D.
-0.0
N.D.
+0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.2
N.D.
+0.0
N.D.
+0.1
stress
R2A with 3-octanone 5.31033333333333 mM
+0.3
N.D.
-0.0
N.D.
+0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.2
N.D.
+0.1
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
+0.1
N.D.
+0.1
N.D.
+0.1
carbon source
D-Galactose (C)
+0.3
N.D.
-0.0
N.D.
+0.1
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