Fitness for 5 genes in Lysobacter sp. OAE881

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500 ntABIE51_RS00605 and ABIE51_RS00610 are separated by 83 nucleotidesABIE51_RS00610 and ABIE51_RS00615 are separated by 80 nucleotidesABIE51_RS00615 and ABIE51_RS00620 are separated by 116 nucleotidesABIE51_RS00620 and ABIE51_RS00625 overlap by 4 nucleotides ABIE51_RS00605: ABIE51_RS00605 - LysR substrate-binding domain-containing protein, at 125,746 to 126,720 _RS00605 ABIE51_RS00610: ABIE51_RS00610 - class I SAM-dependent methyltransferase, at 126,804 to 127,655 _RS00610 ABIE51_RS00615: ABIE51_RS00615 - pseudouridine synthase, at 127,736 to 128,269 _RS00615 ABIE51_RS00620: ABIE51_RS00620 - nicotinate phosphoribosyltransferase, at 128,386 to 129,810 _RS00620 ABIE51_RS00625: ABIE51_RS00625 - DMT family transporter, at 129,807 to 130,799 _RS00625
Group Condition ABIE51_RS00605 ABIE51_RS00610 ABIE51_RS00615 ABIE51_RS00620 ABIE51_RS00625
carbon source 2-Deoxy-D-Ribose (C) -0.1 -0.3 -0.7 -0.1 -0.1
carbon source L-Malic (C) +0.1 -0.2 -0.5 -0.4 +0.0
carbon source L-tyrosine (C) -0.1 -0.0 -0.4 -0.6 -0.1
carbon source D-Glucuronic Acid (C) +0.1 -0.2 -0.3 -0.1 -0.0
carbon source D-Glucose-6-Phosphate (C) -0.0 -0.2 -0.2 -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media -0.2 -0.0 -0.3 -0.2 -0.0
stress R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM -0.1 -0.1 -0.2 -0.2 -0.0
stress R2A with 1-octen-3-ol 1.08545883333333 mM -0.1 -0.2 -0.2 -0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media -0.0 +0.1 -0.3 -0.2 +0.0
stress R2A with 1-octen-3-ol 1.3568235 mM +0.0 -0.2 -0.3 +0.1 +0.0
stress R2A with 2-pentyl-furan 32.0526 mM +0.1 +0.1 -0.3 -0.3 +0.1
stress R2A with 2-pentyl-furan 32.0526 mM +0.0 +0.1 -0.1 -0.4 +0.0
stress R2A with 1-octen-3-ol 1.08545883333333 mM -0.1 -0.2 -0.1 +0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media +0.1 +0.1 -0.3 -0.2 +0.0
carbon source Ying_Others16 rep B; time point 1 -0.3 -0.2 +0.1 +0.1 +0.0
carbon source Ying_sugar7 rep C; time point 3 -0.1 -0.2 -0.0 -0.2 +0.2
carbon source pyruvate (C) +0.1 -0.0 -0.3 -0.1 +0.1
agar plate interaction control Parafilmed volatile R2A_HEPES agar plate with no fungus -0.1 +0.1 -0.3 -0.0 +0.1
carbon source Glucuronamide (C) -0.1 -0.1 -0.3 +0.0 +0.3
carbon source L-Tryptophan (C) +0.2 -0.1 -0.5 +0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media +0.1 +0.0 -0.1 -0.2 +0.1
stress R2A with 2-pentyl-furan 21.3684 mM +0.1 -0.1 +0.1 -0.3 +0.1
carbon source L-Glutamine (C) -0.1 -0.1 +0.1 +0.2 -0.1
carbon source acetate (C) +0.2 +0.2 -0.3 +0.1 -0.1
stress R2A with 2-pentyl-furan 32.0526 mM +0.3 -0.1 +0.1 -0.2 +0.1
carbon source D-Cellobiose (C) +0.0 -0.1 -0.2 +0.2 +0.3
carbon source succinate (C) +0.2 -0.1 +0.4 -0.0 +0.0
carbon source Ying_all64 rep B; time point 3 +0.2 -0.0 +0.1 +0.2 +0.0
stress R2A with 3-octanone 1.77016666666667 mM +0.2 +0.1 +0.3 +0.1 +0.0
carbon source Ying_AminoAcid20 rep C; time point 3 +0.0 +0.1 +0.4 -0.0 +0.2
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