Fitness for 3 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4778 and BT4779 are separated by 12 nucleotidesBT4779 and BT4780 are separated by 4 nucleotides BT4778: BT4778 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,257,802 to 6,258,647 BT4778 BT4779: BT4779 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,258,660 to 6,259,064 BT4779 BT4780: BT4780 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,259,069 to 6,259,968 BT4780
Group Condition BT4778 BT4779 BT4780
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM -2.3 N.D. -0.6
nitrogen source Gly-DL-Asp (N) -2.8 N.D. -0.0
stress BHIS with Benzethonium chloride 0.002 mM -2.1 N.D. -0.3
stress BHIS with Levofloxacin 0.0015625 mM -2.3 N.D. +0.0
stress BHIS with Sulfamonomethoxine 0.2 mM -2.2 N.D. -0.1
stress Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6 -1.6 N.D. -0.6
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -2.2 N.D. +0.2
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM -2.2 N.D. +0.2
stress BHIS with Cephalothin 0.2 mM -1.2 N.D. -0.8
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 -1.9 N.D. +0.0
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM -1.7 N.D. -0.2
carbon source Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) -1.8 N.D. -0.1
stress BHIS with Chlorpromazine 0.1 mM -2.0 N.D. +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -2.1 N.D. +0.2
stress BHIS with Lithocholic 0.4 mg/ml -1.7 N.D. -0.2
stress BHIS with Benzethonium chloride 0.002 mM -1.6 N.D. -0.2
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse3 -1.0 N.D. -0.8
stress BHIS with Thioridazine 0.025 mM -1.6 N.D. -0.2
stress BHIS with Doxycycline hyclate 0.000390625 mM -1.7 N.D. -0.1
stress BHIS with Irgasan 0.025 mM -1.7 N.D. +0.2
stress BHIS with Benzethonium chloride 0.003 mM -1.7 N.D. +0.3
mouse_post_colonization Post-colonization (Day 12) - Cage6;Mouse1 -1.7 N.D. +0.4
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse4 -1.6 N.D. +0.3
stress Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM -1.6 N.D. +0.4
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.0015625 mM -1.5 N.D. +0.4
stress Varel_Bryant_medium_Glucose with Benzethonium chloride 0.00078125 mM -1.4 N.D. +0.4
carbon source D-Glucose 20mM (C) -1.4 N.D. +0.9
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +1.7 N.D. +0.1
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 +1.2 N.D. +0.9
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.6 N.D. +0.7
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