Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4707 and BT4708 are separated by 24 nucleotidesBT4708 and BT4709 are separated by 42 nucleotidesBT4709 and BT4710 are separated by 23 nucleotidesBT4710 and BT4711 are separated by 17 nucleotides BT4707: BT4707 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 6,176,918 to 6,180,217 BT4707 BT4708: BT4708 - hypothetical protein (NCBI ptt file), at 6,180,242 to 6,181,837 BT4708 BT4709: BT4709 - glycosyl hydrolase (NCBI ptt file), at 6,181,880 to 6,182,821 BT4709 BT4710: BT4710 - conserved hypothetical protein (NCBI ptt file), at 6,182,845 to 6,184,053 BT4710 BT4711: BT4711 - conserved hypothetical protein (NCBI ptt file), at 6,184,071 to 6,185,033 BT4711
Group Condition BT4707 BT4708 BT4709 BT4710 BT4711
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -0.0 -0.7 -0.9 +0.3 -0.4
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 +0.2 -0.6 -0.6 +0.1 -0.7
stress BHIS with Cefoxitin 0.025 mM -0.5 -0.6 +0.1 -0.3 -0.2
stress BHIS with Cephalothin 0.2 mM -0.1 -0.8 -0.3 -0.4 +0.1
stress BHIS with Chlorpromazine 0.1 mM -0.0 -1.3 -0.1 +0.1 -0.2
phage HNL05_cps7_0.1MOI +0.0 -0.9 -0.4 -0.3 +0.1
stress BHIS with Cephalothin 0.1 mM -0.5 -0.8 -0.4 +0.3 +0.1
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM +0.3 -0.3 -0.5 -0.4 -0.3
stress BHIS with Sulfaquinoxaline 0.1 mM -0.3 -0.3 -0.6 -0.3 +0.4
mouse_coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.2 -0.3 -0.8 -0.3 +0.2
phage SJC12_cps8_0.1MOI -0.1 -1.0 -0.4 +0.4 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.1 -0.6 +0.4 -0.4 -0.4
carbon source D-Trehalose 20mM (C) +0.2 +0.2 -1.6 +0.2 +0.2
stress BHIS with Paraquat dichloride 0.1 mg/ml -0.4 -0.9 +0.2 +0.2 +0.1
carbon source Heparin from porcine intestinal mucosa (C) -0.4 -0.9 +0.3 +0.1 +0.1
stress BHIS with Thioridazine 0.025 mM +0.0 -0.9 -0.3 +0.6 -0.1
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.2 -0.9 -0.4 +0.5 +0.4
stress BHIS with Chlorpromazine 0.2 mM +0.0 -1.1 +0.7 +0.2 -0.2
carbon source Heparin from porcine intestinal mucosa (C) -0.2 -0.8 +0.7 -0.0 +0.0
phage SJC15_cps8_1MOI +0.0 -0.6 +0.7 -0.1 -0.2
stress BHIS with Chlorpromazine 0.1 mM -0.1 -0.8 +0.2 +0.1 +0.4
phage ARB14_cps1_0.1MOI +0.3 -0.7 +0.5 +0.2 -0.6
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 +0.0 +0.1 -0.4 +0.8 -0.6
phage SJC12_cps8_0.1MOI +0.2 -0.9 +0.4 +0.2 +0.1
stress Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM +0.2 -0.1 -0.5 +0.4 +0.4
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.2 +0.6 -0.6 +0.3 +0.2
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM -0.4 +0.2 +0.9 -0.3 +0.3
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 +0.3 +0.1 -0.2 +0.8 +0.3
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) -0.3 +0.7 +0.4 +0.2 +0.4
nitrogen source L-aspartic (N) -0.1 +0.7 +0.2 +0.6 +0.2
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