Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4461 and BT4462 are separated by 5 nucleotidesBT4462 and BT4463 are separated by 25 nucleotidesBT4463 and BT4464 overlap by 4 nucleotidesBT4464 and BT4465 are separated by 190 nucleotides BT4461: BT4461 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 5,871,960 to 5,872,532 BT4461 BT4462: BT4462 - conserved hypothetical protein (NCBI ptt file), at 5,872,538 to 5,873,191 BT4462 BT4463: BT4463 - phosphatidate cytidylyltransferase (NCBI ptt file), at 5,873,217 to 5,874,173 BT4463 BT4464: BT4464 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-related protein (NCBI ptt file), at 5,874,170 to 5,874,823 BT4464 BT4465: BT4465 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 5,875,014 to 5,876,879 BT4465
Group Condition BT4461 BT4462 BT4463 BT4464 BT4465
stress BHIS with Cephalothin 0.625 mg/ml -0.4 N.D. -0.1 -0.8 -0.1
stress BHIS with Simvastatin 30 uM -0.2 N.D. -0.2 -1.0 +0.1
stress BHIS with Chenodeoxycholic 0.25 mg/ml -0.4 N.D. -0.4 -0.6 +0.2
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -0.0 N.D. -0.7 -0.6 +0.2
stress BHIS with Sulfamethizole 0.1 mM -0.7 N.D. -0.4 +0.4 +0.0
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM -0.6 N.D. -0.4 +0.5 -0.2
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM -0.2 N.D. -0.8 +0.3 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 N.D. -0.4 -0.5 -0.1
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.3 N.D. +0.4 -0.7 -0.1
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 -0.4 N.D. -0.1 -0.6 +0.4
stress BHIS with Cefoxitin 0.0125 mM -0.4 N.D. -0.6 +0.3 +0.2
carbon source (+)-Arabinogalactan (C) -0.4 N.D. +0.3 -0.4 +0.2
stress BHIS with Sulfamonomethoxine 0.1 mM -0.6 N.D. -0.4 +0.6 +0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 N.D. +0.1 +0.5 -0.2
stress BHIS with Sulfaquinoxaline 0.1 mM -0.3 N.D. -0.6 +0.7 +0.2
carbon source D-Trehalose 20mM (C) +0.1 N.D. +0.6 -0.4 -0.3
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM -0.7 N.D. -0.4 +0.8 +0.4
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 -0.3 N.D. +0.5 -0.5 +0.4
stress BHIS with Dimetridazole 0.00625 mM -0.6 N.D. +0.1 +0.5 +0.3
stress Varel_Bryant_medium_Glucose with Chlorhexidine diacetate salt 0.0015625 mM -0.3 N.D. -0.4 +0.6 +0.2
phage SJC15_cps8_1MOI +0.7 N.D. +0.0 -0.6 +0.3
stress Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM +0.5 N.D. -0.3 +0.5 -0.2
stress BHIS with Sulfamonomethoxine 0.2 mM +0.1 N.D. -0.6 +0.9 +0.1
carbon source D-Trehalose 20mM (C) +0.3 N.D. +0.8 -0.2 -0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 N.D. +0.5 +0.6 +0.1
stress BHIS with Simvastatin 30 uM +0.6 N.D. -0.3 +0.4 +0.4
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM +0.4 N.D. -0.1 +0.6 +0.3
stress BHIS with Sulfamethizole 0.1 mM +0.5 N.D. -0.3 +0.7 +0.3
stress BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM +0.9 N.D. -0.0 +0.3 +0.2
stress BHIS with Thioridazine 0.025 mM +0.4 N.D. +0.8 +0.5 -0.3
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