Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4446 and BT4447 overlap by 1 nucleotidesBT4447 and BT4448 are separated by 187 nucleotidesBT4448 and BT4449 are separated by 57 nucleotidesBT4449 and BT4450 are separated by 21 nucleotides BT4446: BT4446 - sugar phosphate isomerase/epimerase (NCBI ptt file), at 5,857,503 to 5,858,390 BT4446 BT4447: BT4447 - conserved hypothetical protein (NCBI ptt file), at 5,858,390 to 5,859,112 BT4447 BT4448: BT4448 - putative dehydrogenase (NCBI ptt file), at 5,859,300 to 5,860,775 BT4448 BT4449: BT4449 - putative dehydrogenase (NCBI ptt file), at 5,860,833 to 5,861,900 BT4449 BT4450: BT4450 - conserved hypothetical protein (NCBI ptt file), at 5,861,922 to 5,863,157 BT4450
Group Condition BT4446 BT4447 BT4448 BT4449 BT4450
carbon source D-Ribose (C) +0.0 -2.8 N.D. -0.3 -0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 -1.3 N.D. -0.7 -0.4
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.6 -1.0 N.D. -0.4 -0.6
phage DAC16_cps7_0.1MOI -0.2 -1.5 N.D. -0.7 -0.1
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM -0.8 -0.5 N.D. -0.7 -0.4
phage DAC19_cps8_0.1MOI -0.5 -1.3 N.D. -0.2 -0.4
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM -0.4 -0.5 N.D. -0.7 -0.7
carbon source Heparin from porcine intestinal mucosa (C) -0.2 -2.5 N.D. -0.3 +0.6
phage DAC23_cps8_0.1MOI -0.3 -0.8 N.D. -1.0 -0.2
phage SJC12_cps8_0.1MOI -0.2 -2.5 N.D. +0.5 -0.1
stress BHIS with Simvastatin 30 uM -0.0 -0.6 N.D. -1.8 +0.1
carbon source Mannan from Saccharomyces cerevisiae (C) -0.4 -1.5 N.D. +0.2 -0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.6 -1.6 N.D. -0.1 +0.2
phage SJC15_cps8_1MOI -0.3 -2.1 N.D. -0.0 +0.3
control NoPhage +0.2 -1.5 N.D. -0.5 -0.1
carbon source L-Rhamnose (C) -0.4 -1.6 N.D. +0.3 -0.1
phage SJC15_cps8_1MOI +0.0 -1.9 N.D. +0.6 -0.4
phage HNL05_cps7_0.1MOI -0.7 -1.2 N.D. -0.1 +0.4
phage HNL05_cps7_1MOI -0.5 -1.4 N.D. +0.5 +0.1
phage SJC16_cps8_10MOI -0.0 -1.5 N.D. +0.8 +0.1
mouse Post-colonization (Day 7) - Cage1A;Mouse1 +0.6 +0.4 N.D. -1.1 -0.3
stress BHIS with Lithocholic 0.4 mg/ml -0.2 +1.0 N.D. -0.6 -0.6
stress BHIS with Chlorhexidine diacetate salt 0.003125 mM +0.3 +0.9 N.D. -0.8 -0.7
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.1 +1.0 N.D. -1.6 +0.1
stress BHIS with Doxycycline hyclate 0.000390625 mM +0.5 +1.1 N.D. -1.4 -0.3
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 +0.1 +1.5 N.D. -0.8 -0.1
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.0125 mM -0.2 +0.6 N.D. +1.3 -0.3
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.4 +1.4 N.D. -0.5 +0.2
stress BHIS with Cefoxitin 0.025 mM +0.2 +1.9 N.D. -0.5 +0.4
mouse Post-colonization (Day 7) - Cage1C;Mouse2 +0.2 +1.2 N.D. +0.8 -0.2
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