Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4438 and BT4439 are separated by 26 nucleotidesBT4439 and BT4440 are separated by 1 nucleotidesBT4440 and BT4441 are separated by 16 nucleotidesBT4441 and BT4442 are separated by 227 nucleotides BT4438: BT4438 - hypothetical protein (NCBI ptt file), at 5,844,979 to 5,846,328 BT4438 BT4439: BT4439 - hypothetical protein (NCBI ptt file), at 5,846,355 to 5,846,627 BT4439 BT4440: BT4440 - conserved hypothetical protein, putative cell surface protein (NCBI ptt file), at 5,846,629 to 5,853,180 BT4440 BT4441: BT4441 - cell surface protein (NCBI ptt file), at 5,853,197 to 5,853,922 BT4441 BT4442: BT4442 - hypothetical protein (NCBI ptt file), at 5,854,150 to 5,854,500 BT4442
Group Condition BT4438 BT4439 BT4440 BT4441 BT4442
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM -0.3 N.D. +0.1 -0.7 -2.6
carbon source D-Glucose 20mM (C) -0.6 N.D. -0.0 -0.9 -1.8
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.1 N.D. -0.1 -1.2 -1.9
stress BHIS with Doxycycline hyclate 0.0001953125 mM -0.5 N.D. -0.5 -0.6 -1.6
stress BHIS with Zinc Pyrithione 0.05 mM -0.4 N.D. -0.1 -0.7 -1.9
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -0.4 N.D. -0.0 -1.0 -1.4
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 -0.2 N.D. +0.0 -0.3 -2.4
stress Varel_Bryant medium with Chlorpromazine 0.0125 mM -0.1 N.D. +0.0 -1.0 -1.7
stress Varel_Bryant medium with 2,2-dibromo-2-cyanoacetamide 0.2 mM -0.3 N.D. -0.0 -0.4 -2.0
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 -0.3 N.D. -0.1 -1.0 -1.2
stress BHIS with Dimetridazole 0.025 mM +0.5 N.D. -0.0 -1.0 -2.0
mouse_post_colonization Post-colonization (Day 1) - Cage4;Mouse3 -0.2 N.D. +0.1 -0.2 -1.9
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 +0.2 N.D. -0.2 -0.8 -1.2
phage DAC17_cps3_0.1MOI +0.2 N.D. +0.0 -0.2 -2.1
phage SJC12_cps8_0.1MOI +0.1 N.D. +0.2 -1.6 -0.5
carbon source 1,4-B-D-Galactobiose (C) -0.1 N.D. -0.2 +0.4 -2.0
carbon source L-Rhamnose (C) +0.2 N.D. +0.1 -1.0 -1.1
mouse Post-colonization (Day 4) - Cage1C;Mouse3 -0.9 N.D. -0.0 +0.4 -1.1
mouse Post-colonization (Day 7) - Cage1A;Mouse1 -0.2 N.D. -0.1 +1.0 -1.9
phage SJC15_cps8_1MOI -0.0 N.D. -0.1 -1.7 +0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.3 N.D. +0.0 +0.6 -1.9
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 N.D. -0.1 +1.1 -1.5
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 +0.7 N.D. -0.1 +0.2 -1.5
phage SJC12_cps8_0.1MOI +0.5 N.D. -0.0 -1.8 +0.6
stress Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM -0.6 N.D. -0.1 -1.1 +1.2
carbon source D-Trehalose 20mM (C) -0.6 N.D. -0.1 -1.1 +1.4
stress BHIS with Fusidic 0.004 mg/ml -0.6 N.D. -0.4 +0.6 +1.1
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -0.5 N.D. -0.2 +0.1 +1.6
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -0.0 N.D. -0.1 -0.8 +2.0
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM +0.4 N.D. -0.1 -0.6 +1.7
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