Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4342 and BT4343 are separated by 36 nucleotidesBT4343 and BT4344 are separated by 65 nucleotidesBT4344 and BT4345 are separated by 168 nucleotidesBT4345 and BT4346 are separated by 104 nucleotides BT4342: BT4342 - RNA-directed DNA polymerase (NCBI ptt file), at 5,720,067 to 5,721,200 BT4342 BT4343: BT4343 - conserved hypothetical protein (NCBI ptt file), at 5,721,237 to 5,722,175 BT4343 BT4344: BT4344 - conserved hypothetical protein, putative DNA helicase (NCBI ptt file), at 5,722,241 to 5,727,058 BT4344 BT4345: BT4345 - 30S ribosomal protein S1 (NCBI ptt file), at 5,727,227 to 5,729,026 BT4345 BT4346: BT4346 - conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file), at 5,729,131 to 5,730,081 BT4346
Group Condition BT4342 BT4343 BT4344 BT4345 BT4346
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml -0.8 -0.0 -0.5 N.D. -1.5
stress BHIS with Lithocholic 0.4 mg/ml -0.1 -2.4 +0.1 N.D. -0.3
stress BHIS with Dimethyl Sulfoxide 9 vol% -0.9 -1.3 +0.3 N.D. -0.6
stress BHIS with Dimetridazole 0.00625 mM -0.1 +0.4 -0.4 N.D. -2.0
stress BHIS with Chenodeoxycholic 0.25 mg/ml +0.2 -2.4 +0.1 N.D. +0.1
stress BHIS with Lithocholic 0.4 mg/ml +0.2 -2.0 +0.2 N.D. +0.1
carbon source Heparin from porcine intestinal mucosa (C) +0.2 +0.6 -0.1 N.D. -2.2
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM -0.2 +0.8 +0.2 N.D. -2.2
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -0.5 -1.5 +0.1 N.D. +0.9
mouse_post_colonization Post-colonization (Day 1) - Cage4;Mouse3 +0.6 +0.5 +0.2 N.D. -2.2
stress BHIS with Deoxycholic 0.2 mg/ml -0.1 -1.6 +0.3 N.D. +0.5
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -1.4 +0.8 -0.3 N.D. +0.0
stress BHIS with Chenodeoxycholic 0.25 mg/ml -0.3 -1.6 +0.4 N.D. +0.8
control NoPhage -0.1 +0.9 +0.1 N.D. -1.6
carbon source Hyaluronic from Streptococcus equi -0.1 -1.5 +0.2 N.D. +1.1
phage ARB14_cps1_0.1MOI -0.4 +1.3 +0.1 N.D. -1.0
phage HNL05_cps7_0.1MOI -0.5 +1.3 -0.0 N.D. -0.8
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 +0.5 +0.6 +0.2 N.D. -1.2
stress BHIS with 5-Fluorouracil 0.1 mM +0.2 +1.6 -0.2 N.D. -1.1
stress Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM +0.6 +1.1 -0.5 N.D. -0.5
stress BHIS with Sulfamonomethoxine 0.1 mM +0.4 +1.4 -0.2 N.D. -0.7
stress BHIS with Thioridazine 0.0125 mM +0.9 +0.8 +0.1 N.D. -0.8
stress BHIS with Thioridazine 0.025 mM +0.8 +1.2 +0.3 N.D. -1.3
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.4 +0.2 -0.2 N.D. +1.8
stress BHIS with Trimethoprim 0.00625 mM -0.1 +2.1 -0.1 N.D. -0.3
stress BHIS with Trimethoprim 0.0125 mM +0.8 +1.9 -0.1 N.D. -0.6
carbon source D-Glucose 5 mg/ml (C) +0.1 +0.6 -0.2 N.D. +1.7
stress BHIS with Thioridazine 0.0125 mM +0.2 +1.5 -0.1 N.D. +0.8
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.2 +0.8 -0.2 N.D. +1.5
stress BHIS with Cefoxitin 0.025 mM +0.8 +0.9 +0.0 N.D. +2.3
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