Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4340 and BT4341 are separated by 428 nucleotidesBT4341 and BT4342 are separated by 205 nucleotidesBT4342 and BT4343 are separated by 36 nucleotidesBT4343 and BT4344 are separated by 65 nucleotides BT4340: BT4340 - hypothetical protein (NCBI ptt file), at 5,717,073 to 5,717,273 BT4340 BT4341: BT4341 - hypothetical protein (NCBI ptt file), at 5,717,702 to 5,719,861 BT4341 BT4342: BT4342 - RNA-directed DNA polymerase (NCBI ptt file), at 5,720,067 to 5,721,200 BT4342 BT4343: BT4343 - conserved hypothetical protein (NCBI ptt file), at 5,721,237 to 5,722,175 BT4343 BT4344: BT4344 - conserved hypothetical protein, putative DNA helicase (NCBI ptt file), at 5,722,241 to 5,727,058 BT4344
Group Condition BT4340 BT4341 BT4342 BT4343 BT4344
carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) -0.7 -1.6 -0.2 -0.1 -0.4
stress BHIS with Dimethyl Sulfoxide 9 vol% -0.1 -0.5 -0.9 -1.3 +0.3
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 +0.5 -1.1 -0.5 -1.5 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 -0.7 -2.2 +0.1 +0.3 +0.2
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -0.6 -2.1 +0.2 +0.0 +0.2
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.1 -2.2 +0.5 -0.4 -0.1
mouse_peg_treatment PEG (Day 2) - Cage5;Mouse1 -0.0 -2.1 +0.0 -0.5 +0.5
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -0.8 -2.1 +0.4 +0.4 +0.2
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 +0.3 -2.5 +0.1 +0.2 +0.1
stress BHIS with Chenodeoxycholic 0.25 mg/ml +0.6 -0.2 +0.2 -2.4 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 -0.2 -2.3 +0.3 +0.2 +0.4
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 -0.2 -2.1 +0.6 +0.0 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.2 -2.3 +0.4 -0.1 +0.3
stress BHIS with Deoxycholic 0.2 mg/ml +0.5 -0.5 -0.1 -1.6 +0.3
mouse_post_colonization Post-colonization (Day 14) - Cage5;Mouse1 +0.5 -2.2 +0.1 -0.0 +0.2
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.5 +0.2 -1.4 +0.8 -0.3
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 +0.3 -2.2 +0.4 -0.1 +0.3
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 +0.5 -2.2 +0.2 -0.0 +0.4
stress BHIS with Chenodeoxycholic 0.25 mg/ml +0.7 -0.0 -0.3 -1.6 +0.4
stress BHIS with Lithocholic 0.4 mg/ml +0.6 +0.2 +0.2 -2.0 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 +0.4 -1.9 +0.5 +0.3 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 +0.5 -1.7 +0.3 +0.1 +0.4
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 +1.1 -1.8 -0.1 -0.2 +0.7
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 +0.7 -1.7 +0.4 +0.5 +0.0
mouse_post_colonization Post-colonization (Day 14) - Cage4;Mouse4 +0.7 -1.5 +0.6 -0.2 +0.3
stress BHIS with Dimethyl Sulfoxide 9 vol% +1.1 +0.4 -0.2 -1.3 +0.1
stress BHIS with Simvastatin 30 uM +1.0 +0.7 +0.2 -1.0 -0.2
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.7 -1.2 +1.2 +0.2 +0.1
stress BHIS with Trimethoprim 0.0125 mM +0.3 -0.3 +0.8 +1.9 -0.1
stress BHIS with Thioridazine 0.025 mM +0.8 +0.3 +0.8 +1.2 +0.3
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