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Protein
Homologs
Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT4340 and BT4341 are separated by 428 nucleotides
BT4341 and BT4342 are separated by 205 nucleotides
BT4342 and BT4343 are separated by 36 nucleotides
BT4343 and BT4344 are separated by 65 nucleotides
BT4340: BT4340 - hypothetical protein (NCBI ptt file), at 5,717,073 to 5,717,273
BT4340
BT4341: BT4341 - hypothetical protein (NCBI ptt file), at 5,717,702 to 5,719,861
BT4341
BT4342: BT4342 - RNA-directed DNA polymerase (NCBI ptt file), at 5,720,067 to 5,721,200
BT4342
BT4343: BT4343 - conserved hypothetical protein (NCBI ptt file), at 5,721,237 to 5,722,175
BT4343
BT4344: BT4344 - conserved hypothetical protein, putative DNA helicase (NCBI ptt file), at 5,722,241 to 5,727,058
BT4344
Group
Condition
BT4340
BT4341
BT4342
BT4343
BT4344
carbon source
dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C)
-0.7
-1.6
-0.2
-0.1
-0.4
stress
BHIS with Dimethyl Sulfoxide 9 vol%
-0.1
-0.5
-0.9
-1.3
+0.3
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
+0.5
-1.1
-0.5
-1.5
+0.1
mouse_post_colonization
Post-colonization (Day 14) - Cage2;Mouse2
-0.7
-2.2
+0.1
+0.3
+0.2
mouse_peg_treatment
PEG (Day 2) - Cage3;Mouse3
-0.6
-2.1
+0.2
+0.0
+0.2
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.1
-2.2
+0.5
-0.4
-0.1
mouse_peg_treatment
PEG (Day 2) - Cage5;Mouse1
-0.0
-2.1
+0.0
-0.5
+0.5
mouse_post_colonization
Post-colonization (Day 14) - Cage3;Mouse3
-0.8
-2.1
+0.4
+0.4
+0.2
mouse_peg_treatment
PEG (Day 1) - Cage2;Mouse1
+0.3
-2.5
+0.1
+0.2
+0.1
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
+0.6
-0.2
+0.2
-2.4
+0.1
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse3
-0.2
-2.3
+0.3
+0.2
+0.4
mouse_post_colonization
Post-colonization (Day 10) - Cage5;Mouse3
-0.2
-2.1
+0.6
+0.0
+0.2
mouse_post_colonization
Post-colonization (Day 14) - Cage3;Mouse1
+0.2
-2.3
+0.4
-0.1
+0.3
stress
BHIS with Deoxycholic 0.2 mg/ml
+0.5
-0.5
-0.1
-1.6
+0.3
mouse_post_colonization
Post-colonization (Day 14) - Cage5;Mouse1
+0.5
-2.2
+0.1
-0.0
+0.2
stress
Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM
-0.5
+0.2
-1.4
+0.8
-0.3
mouse_post_colonization
Post-colonization (Day 10) - Cage4;Mouse1
+0.3
-2.2
+0.4
-0.1
+0.3
mouse_post_colonization
Post-colonization (Day 12) - Cage4;Mouse1
+0.5
-2.2
+0.2
-0.0
+0.4
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
+0.7
-0.0
-0.3
-1.6
+0.4
stress
BHIS with Lithocholic 0.4 mg/ml
+0.6
+0.2
+0.2
-2.0
+0.2
mouse_post_colonization
Post-colonization (Day 14) - Cage1;Mouse3
+0.4
-1.9
+0.5
+0.3
+0.1
mouse_post_colonization
Post-colonization (Day 14) - Cage7;Mouse3
+0.5
-1.7
+0.3
+0.1
+0.4
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
+1.1
-1.8
-0.1
-0.2
+0.7
mouse_post_colonization
Post-colonization (Day 12) - Cage4;Mouse5
+0.7
-1.7
+0.4
+0.5
+0.0
mouse_post_colonization
Post-colonization (Day 14) - Cage4;Mouse4
+0.7
-1.5
+0.6
-0.2
+0.3
stress
BHIS with Dimethyl Sulfoxide 9 vol%
+1.1
+0.4
-0.2
-1.3
+0.1
stress
BHIS with Simvastatin 30 uM
+1.0
+0.7
+0.2
-1.0
-0.2
mouse_peg_treatment
PEG (Day 1 ) - Cage1;Mouse5
+0.7
-1.2
+1.2
+0.2
+0.1
stress
BHIS with Trimethoprim 0.0125 mM
+0.3
-0.3
+0.8
+1.9
-0.1
stress
BHIS with Thioridazine 0.025 mM
+0.8
+0.3
+0.8
+1.2
+0.3
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