Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4293 and BT4294 are separated by 93 nucleotidesBT4294 and BT4295 are separated by 115 nucleotidesBT4295 and BT4296 are separated by 9 nucleotidesBT4296 and BT4297 are separated by 9 nucleotides BT4293: BT4293 - conserved hypothetical protein (NCBI ptt file), at 5,655,051 to 5,656,796 BT4293 BT4294: BT4294 - hypothetical protein (NCBI ptt file), at 5,656,890 to 5,657,591 BT4294 BT4295: BT4295 - putative chitobiase (NCBI ptt file), at 5,657,707 to 5,659,551 BT4295 BT4296: BT4296 - hypothetical protein (NCBI ptt file), at 5,659,561 to 5,660,598 BT4296 BT4297: BT4297 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,660,608 to 5,662,659 BT4297
Group Condition BT4293 BT4294 BT4295 BT4296 BT4297
carbon source (+)-Arabinogalactan (C) N.D. -1.2 -0.9 -0.6 -1.4
carbon source (+)-Arabinogalactan (C) N.D. -0.5 -1.1 -0.9 -1.0
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 N.D. -0.8 -0.5 -0.6 -0.1
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 N.D. -0.9 -0.1 -0.7 -0.3
stress BHIS with Sulfamonomethoxine 0.1 mM N.D. -0.7 -0.2 -0.5 -0.1
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 N.D. -1.0 -0.2 -0.3 -0.0
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse1 N.D. -0.7 -0.1 -0.6 -0.1
carbon source Heparin from porcine intestinal mucosa (C) N.D. -1.3 +0.4 -0.5 -0.0
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 N.D. -0.6 -0.1 -0.6 -0.1
stress BHIS with 5-Fluorouracil 0.1 mM N.D. -0.8 -0.2 -0.5 +0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) N.D. -0.9 -0.2 -0.2 -0.0
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 N.D. -0.9 +0.1 -0.5 -0.1
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse2 N.D. -0.9 -0.4 -0.1 +0.3
stress BHIS with 5-Fluorouracil 0.2 mM N.D. -0.7 +0.2 -0.7 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. -0.3 -0.3 -0.7 +0.1
stress BHIS with Rifampicin 0.0000244140625 mM N.D. -0.6 -0.5 -0.1 +0.1
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 N.D. -1.1 -0.1 -0.0 +0.2
carbon source Heparin from porcine intestinal mucosa (C) N.D. -0.7 +0.3 -0.4 -0.2
stress BHIS with Trimethoprim 0.00625 mM N.D. -0.6 -0.3 -0.3 +0.3
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM N.D. -0.7 +0.1 -0.4 +0.1
mouse_post_colonization Post-colonization (Day 6) - Cage5;Mouse2 N.D. -0.9 -0.0 -0.1 +0.3
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 N.D. -0.8 +0.2 -0.3 +0.2
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 N.D. -0.7 +0.2 +0.2 -0.2
stress BHIS with Doxycycline hyclate 0.0001953125 mM N.D. -0.6 -0.4 +0.6 -0.1
phage DAC20_cps8_1MOI N.D. +0.2 +0.3 -0.7 +0.3
stress BHIS with Simvastatin 30 uM N.D. +0.9 -0.5 -0.5 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. +0.8 +0.2 +0.1 -0.6
stress BHIS with Chloride 350 mM N.D. +0.3 +0.5 +0.2 -0.3
stress Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM N.D. +0.2 -0.3 +0.6 +0.5
phage SJC15_cps8_1MOI N.D. +0.3 +0.5 +0.3 +0.3
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