Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4215 and BT4216 are separated by 38 nucleotidesBT4216 and BT4217 are separated by 2 nucleotidesBT4217 and BT4218 are separated by 46 nucleotidesBT4218 and BT4219 are separated by 90 nucleotides BT4215: BT4215 - shikimate dehydrogenase (EC 1.1.1.25) (from data), at 5,552,093 to 5,552,839 BT4215 BT4216: BT4216 - ubiquinone/menaquinone biosynthesis methyltransferase (NCBI ptt file), at 5,552,878 to 5,553,615 BT4216 BT4217: BT4217 - phosphoribosylamidoimidazole-succinocarboxamide synthase (NCBI ptt file), at 5,553,618 to 5,554,562 BT4217 BT4218: BT4218 - phosphate starvation-inducible protein, PhoH (NCBI ptt file), at 5,554,609 to 5,555,625 BT4218 BT4219: BT4219 - hypothetical protein (NCBI ptt file), at 5,555,716 to 5,556,393 BT4219
Group Condition BT4215 BT4216 BT4217 BT4218 BT4219
carbon source D-Ribose (C) N.D. N.D. N.D. -0.8 -2.1
stress BHIS with Paraquat dichloride 0.1 mg/ml N.D. N.D. N.D. -0.8 -1.5
stress BHIS with Thioridazine 0.0125 mM N.D. N.D. N.D. -1.4 -0.9
stress BHIS with Fusidic 0.004 mg/ml N.D. N.D. N.D. -1.3 -1.0
phage SJC15_cps8_1MOI N.D. N.D. N.D. -0.9 -1.2
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 N.D. N.D. N.D. -1.4 -0.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. N.D. -1.0 -1.0
stress BHIS with Chlorpromazine 0.1 mM N.D. N.D. N.D. -0.7 -1.3
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM N.D. N.D. N.D. -0.2 -1.7
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM N.D. N.D. N.D. -0.1 -1.9
stress BHIS with Chlorpromazine 0.2 mM N.D. N.D. N.D. -0.8 -1.1
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse4 N.D. N.D. N.D. -1.0 -0.9
stress BHIS with Paraquat dichloride 0.1 mg/ml N.D. N.D. N.D. -0.7 -1.1
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 N.D. N.D. N.D. -1.5 -0.2
stress BHIS with Irgasan 0.0125 mM N.D. N.D. N.D. -1.0 -0.7
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. N.D. -1.1 -0.6
carbon source Heparin from porcine intestinal mucosa (C) N.D. N.D. N.D. -0.8 -0.9
carbon source D-Trehalose 20mM (C) N.D. N.D. N.D. -0.4 -1.3
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 N.D. N.D. N.D. -1.4 +0.4
stress BHIS with Dimetridazole 0.00625 mM N.D. N.D. N.D. -1.7 +0.9
stress BHIS with Zinc Pyrithione 0.025 mM N.D. N.D. N.D. -1.2 +0.5
stress BHIS with Thioridazine 0.025 mM N.D. N.D. N.D. +0.7 -1.0
stress BHIS with 5-Fluorouracil 0.1 mM N.D. N.D. N.D. +0.9 -1.0
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 N.D. N.D. N.D. -1.1 +1.1
nitrogen source L-aspartic (N) N.D. N.D. N.D. -0.8 +0.8
phage DAC19_cps8_1MOI N.D. N.D. N.D. -0.6 +1.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. N.D. N.D. +1.3 -0.5
phage SJC03_cps7_0.1MOI N.D. N.D. N.D. -0.4 +1.3
stress Varel_Bryant medium with Chlorpromazine 0.05 mM N.D. N.D. N.D. +1.4 -0.5
nitrogen source L-Valine (N) N.D. N.D. N.D. +0.5 +1.4
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