Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4179 and BT4180 are separated by 47 nucleotidesBT4180 and BT4181 are separated by 652 nucleotidesBT4181 and BT4182 are separated by 87 nucleotidesBT4182 and BT4183 are separated by 344 nucleotides BT4179: BT4179 - polysaccharide deacetylase (NCBI ptt file), at 5,505,198 to 5,506,823 BT4179 BT4180: BT4180 - acetyl xylan esterase A (NCBI ptt file), at 5,506,871 to 5,507,674 BT4180 BT4181: BT4181 - beta-galactosidase (NCBI ptt file), at 5,508,327 to 5,511,296 BT4181 BT4182: BT4182 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 5,511,384 to 5,515,679 BT4182 BT4183: BT4183 - pectate lyase L precursor (NCBI ptt file), at 5,516,024 to 5,517,337 BT4183
Group Condition BT4179 BT4180 BT4181 BT4182 BT4183
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 -0.1 -1.2 +0.1 -0.2 +0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 -0.8 +0.1 -0.2 -0.3
stress BHIS with Chenodeoxycholic 0.25 mg/ml -0.0 -1.1 -0.1 -0.3 +0.2
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.9 -0.5 +0.2 -0.2 +0.1
stress BHIS with Lithocholic 0.4 mg/ml -0.4 -0.9 +0.1 -0.3 +0.4
stress BHIS with Dimethyl Sulfoxide 9 vol% -0.0 -1.2 +0.3 -0.2 +0.1
stress BHIS with Chenodeoxycholic 0.25 mg/ml +0.1 -1.1 +0.2 -0.1 +0.1
stress BHIS with Deoxycholic 0.2 mg/ml -0.2 -0.9 +0.1 -0.1 +0.2
stress BHIS with Fusidic 0.004 mg/ml -0.4 -0.6 +0.0 -0.1 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.3 -0.6 -0.2 +0.1 -0.3
stress BHIS with Lithocholic 0.4 mg/ml -0.2 -0.8 +0.0 -0.1 +0.3
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.0 -1.0 +0.3 -0.2 +0.1
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 -0.3 -0.8 +0.2 -0.1 +0.5
stress BHIS with Chlorhexidine diacetate salt 0.0015625 mM +0.3 -0.7 +0.2 -0.2 +0.0
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.3 -0.2 -0.2 +0.2 -0.5
carbon source Lactulose 20mM (C) +0.1 -0.9 +0.3 -0.0 +0.3
stress BHIS with 5-Fluorouracil 0.1 mM -0.4 +0.6 -0.4 +0.2 -0.2
carbon source Maltitol 20mM (C) +0.2 -0.7 +0.2 -0.1 +0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +0.3 +0.0 +0.3 -0.8
stress BHIS with Dimetridazole 0.00078125 mM +0.3 -0.5 +0.3 -0.2 +0.2
stress BHIS with Cephalothin 0.2 mM +0.1 +0.7 -0.0 -0.2 -0.4
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.6 -0.4 +0.2 +0.0 -0.2
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) -0.1 +0.8 -0.2 +0.1 -0.3
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM +0.5 +0.3 -0.3 +0.1 -0.3
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM +0.5 +0.1 -0.4 +0.3 -0.2
carbon source Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) +0.0 +0.8 -0.2 +0.2 -0.3
stress BHIS with Trimethoprim 0.0125 mM -0.1 +0.7 -0.4 +0.3 +0.0
carbon source Mannan from Saccharomyces cerevisiae (C) +0.3 +0.8 -0.2 +0.0 -0.4
carbon source Mannan from Saccharomyces cerevisiae (C) +0.3 +0.9 -0.3 +0.0 -0.3
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) +0.1 +0.7 -0.1 +0.3 -0.3
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