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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT4179 and BT4180 are separated by 47 nucleotides
BT4180 and BT4181 are separated by 652 nucleotides
BT4181 and BT4182 are separated by 87 nucleotides
BT4182 and BT4183 are separated by 344 nucleotides
BT4179: BT4179 - polysaccharide deacetylase (NCBI ptt file), at 5,505,198 to 5,506,823
BT4179
BT4180: BT4180 - acetyl xylan esterase A (NCBI ptt file), at 5,506,871 to 5,507,674
BT4180
BT4181: BT4181 - beta-galactosidase (NCBI ptt file), at 5,508,327 to 5,511,296
BT4181
BT4182: BT4182 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 5,511,384 to 5,515,679
BT4182
BT4183: BT4183 - pectate lyase L precursor (NCBI ptt file), at 5,516,024 to 5,517,337
BT4183
Group
Condition
BT4179
BT4180
BT4181
BT4182
BT4183
mouse_post_colonization
Post-colonization (Day 14) - Cage7;Mouse3
-0.1
-1.2
+0.1
-0.2
+0.0
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
-0.1
-0.8
+0.1
-0.2
-0.3
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
-0.0
-1.1
-0.1
-0.3
+0.2
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.9
-0.5
+0.2
-0.2
+0.1
stress
BHIS with Lithocholic 0.4 mg/ml
-0.4
-0.9
+0.1
-0.3
+0.4
stress
BHIS with Dimethyl Sulfoxide 9 vol%
-0.0
-1.2
+0.3
-0.2
+0.1
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
+0.1
-1.1
+0.2
-0.1
+0.1
stress
BHIS with Deoxycholic 0.2 mg/ml
-0.2
-0.9
+0.1
-0.1
+0.2
stress
BHIS with Fusidic 0.004 mg/ml
-0.4
-0.6
+0.0
-0.1
+0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
+0.3
-0.6
-0.2
+0.1
-0.3
stress
BHIS with Lithocholic 0.4 mg/ml
-0.2
-0.8
+0.0
-0.1
+0.3
stress
BHIS with Dimethyl Sulfoxide 9 vol%
+0.0
-1.0
+0.3
-0.2
+0.1
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
-0.3
-0.8
+0.2
-0.1
+0.5
stress
BHIS with Chlorhexidine diacetate salt 0.0015625 mM
+0.3
-0.7
+0.2
-0.2
+0.0
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
+0.3
-0.2
-0.2
+0.2
-0.5
carbon source
Lactulose 20mM (C)
+0.1
-0.9
+0.3
-0.0
+0.3
stress
BHIS with 5-Fluorouracil 0.1 mM
-0.4
+0.6
-0.4
+0.2
-0.2
carbon source
Maltitol 20mM (C)
+0.2
-0.7
+0.2
-0.1
+0.3
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.2
+0.3
+0.0
+0.3
-0.8
stress
BHIS with Dimetridazole 0.00078125 mM
+0.3
-0.5
+0.3
-0.2
+0.2
stress
BHIS with Cephalothin 0.2 mM
+0.1
+0.7
-0.0
-0.2
-0.4
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
+0.6
-0.4
+0.2
+0.0
-0.2
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
-0.1
+0.8
-0.2
+0.1
-0.3
stress
Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM
+0.5
+0.3
-0.3
+0.1
-0.3
stress
Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM
+0.5
+0.1
-0.4
+0.3
-0.2
carbon source
Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
+0.0
+0.8
-0.2
+0.2
-0.3
stress
BHIS with Trimethoprim 0.0125 mM
-0.1
+0.7
-0.4
+0.3
+0.0
carbon source
Mannan from Saccharomyces cerevisiae (C)
+0.3
+0.8
-0.2
+0.0
-0.4
carbon source
Mannan from Saccharomyces cerevisiae (C)
+0.3
+0.9
-0.3
+0.0
-0.3
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
+0.1
+0.7
-0.1
+0.3
-0.3
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