Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4119 and BT4120 are separated by 29 nucleotidesBT4120 and BT4121 are separated by 26 nucleotidesBT4121 and BT4122 are separated by 14 nucleotidesBT4122 and BT4123 are separated by 290 nucleotides BT4119: BT4119 - conserved hypothetical protein (NCBI ptt file), at 5,393,605 to 5,395,284 BT4119 BT4120: BT4120 - hypothetical protein (NCBI ptt file), at 5,395,314 to 5,396,981 BT4120 BT4121: BT4121 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,397,008 to 5,400,436 BT4121 BT4122: BT4122 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,400,451 to 5,402,526 BT4122 BT4123: BT4123 - exo-poly-alpha-D-galacturonosidase precursor (NCBI ptt file), at 5,402,817 to 5,404,403 BT4123
Group Condition BT4119 BT4120 BT4121 BT4122 BT4123
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 -0.4 -0.7 -0.5 -0.4 +1.6
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 -0.4 -0.3 -0.6 -0.9 +1.8
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse4 -0.5 -0.3 -0.2 -0.4 +1.3
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -0.3 -0.5 -0.4 -0.2 +1.4
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 -0.4 +0.2 -0.5 -0.5 +1.3
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse3 -0.4 -0.3 -0.5 -0.8 +2.3
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -0.3 -0.0 -0.3 -0.7 +1.7
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 -0.5 -0.7 -0.4 -0.4 +2.1
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 -0.5 -0.4 -0.2 -0.3 +1.7
mouse_post_colonization Post-colonization (Day 12) - Cage1;Mouse3 -0.4 -0.3 -0.4 -0.3 +1.7
mouse_peg_treatment PEG (Day 2) - Cage5;Mouse1 -0.2 -0.4 -0.6 -0.1 +1.6
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 -0.2 -0.1 -0.4 -0.4 +1.5
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse3 -0.4 -0.4 -0.1 -0.2 +1.7
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -0.4 -0.3 -0.6 -0.5 +2.5
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -0.0 -0.3 -0.4 -0.6 +2.1
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.3 -0.3 -0.2 -0.4 +1.9
mouse_post_colonization Post-colonization (Day 12) - Cage6;Mouse1 -0.3 -0.2 -0.4 -0.2 +2.0
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 -0.2 -0.1 -0.3 -0.3 +1.8
mouse_coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 -0.0 -0.2 -0.5 +1.9
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 -0.4 -0.1 -0.3 -0.1 +1.9
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.0 -0.0 -0.7 -0.6 +2.4
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -0.1 -0.2 -0.4 -0.1 +2.0
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 -0.3 +0.0 -0.6 -0.1 +2.3
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 -0.3 -0.1 -0.3 -0.2 +2.3
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse4 -0.3 +0.2 -0.4 -0.3 +2.3
mouse_post_colonization Post-colonization (Day 14) - Cage4;Mouse4 +0.1 +0.0 -0.6 -0.3 +2.3
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse4 -0.1 -0.4 -0.2 +0.1 +2.2
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -0.2 -0.1 -0.1 -0.3 +2.3
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 -0.1 +0.1 -0.4 -0.1 +2.1
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 -0.1 +0.2 -0.2 -0.3 +2.7
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