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Protein
Homologs
Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT4117 and BT4118 are separated by 3 nucleotides
BT4118 and BT4119 are separated by 450 nucleotides
BT4119 and BT4120 are separated by 29 nucleotides
BT4120 and BT4121 are separated by 26 nucleotides
BT4117: BT4117 - conserved hypothetical protein (NCBI ptt file), at 5,391,544 to 5,392,338
BT4117
BT4118: BT4118 - putative two-component system response regulator, no kinase domain (NCBI ptt file), at 5,392,342 to 5,393,154
BT4118
BT4119: BT4119 - conserved hypothetical protein (NCBI ptt file), at 5,393,605 to 5,395,284
BT4119
BT4120: BT4120 - hypothetical protein (NCBI ptt file), at 5,395,314 to 5,396,981
BT4120
BT4121: BT4121 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,397,008 to 5,400,436
BT4121
Group
Condition
BT4117
BT4118
BT4119
BT4120
BT4121
mouse_peg_treatment
PEG (Day 1) - Cage3;Mouse1
-0.7
-1.2
-0.4
-0.3
-0.6
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
-0.2
-0.7
-0.5
-0.4
-0.2
stress
BHIS with Dimetridazole 0.0015625 mM
-0.3
-1.0
-0.2
-0.2
-0.2
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse3
-0.7
-0.4
-0.4
-0.1
-0.3
mouse_post_colonization
Post-colonization (Day 14) - Cage3;Mouse1
-0.4
-0.6
-0.3
+0.0
-0.6
mouse_post_colonization
Post-colonization (Day 14) - Cage1;Mouse3
-0.1
-0.1
-0.5
-0.7
-0.4
mouse_recovery_after_peg
Post-colonization (Day 14) - Cage4;Mouse2
+0.4
-0.4
-0.4
-0.7
-0.5
stress
BHIS with Irgasan 0.0125 mM
-0.5
-0.7
+0.1
-0.1
-0.3
mouse_peg_treatment
PEG (Day 2) - Cage5;Mouse1
+0.1
-0.4
-0.2
-0.4
-0.6
mouse_post_colonization
Post-colonization (Day 14) - Cage5;Mouse4
-0.5
+0.1
-0.6
-0.2
-0.2
stress
BHIS with Dimethyl Sulfoxide 0.1 vol%
-0.5
-0.8
+0.4
-0.2
-0.2
mouse_peg_treatment
PEG (Day 1) - Cage2;Mouse1
+0.3
-0.2
-0.4
-0.3
-0.6
stress
BHIS with Lincomycin 0.0015625 mM
-0.1
-0.8
+0.3
-0.3
-0.3
stress
BHIS with Chlorhexidine diacetate salt 0.003125 mM
-0.3
-0.8
+0.3
-0.1
-0.1
phage
DAC23_cps8_10MOI
-0.6
-0.6
-0.2
+0.0
+0.3
stress
Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
+0.1
-0.6
+0.3
-0.4
-0.4
survival
aerobic shaking 48 hr copy A
-0.8
-0.4
-0.3
+0.4
+0.3
stress
BHIS with Sulfaquinoxaline 0.1 mM
-0.7
+0.2
+0.3
-0.5
+0.1
control
NoPhage
-0.9
+0.3
-0.1
-0.1
+0.3
stress
BHIS with Trimethoprim 0.0125 mM
-0.8
+0.5
-0.2
+0.0
+0.1
carbon source
D-Ribose (C)
-0.5
+0.6
-0.3
-0.2
+0.2
stress
BHIS with Benzethonium chloride 0.003 mM
+0.8
-0.7
-0.1
-0.3
-0.0
stress
BHIS with Fusidic 0.002 mg/ml
+0.6
-0.5
+0.2
-0.3
-0.2
phage
ARB14_cps1_0.1MOI
-0.2
-0.8
+0.1
+0.5
+0.2
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
-0.2
-0.3
+0.4
+0.5
-0.4
phage
DAC16_cps7_1MOI
-0.7
+0.5
-0.1
+0.3
+0.1
stress
BHIS with Fusidic 0.004 mg/ml
+0.7
-0.2
+0.2
-0.3
-0.3
stress
BHIS with Fusidic 0.004 mg/ml
+1.0
-0.4
-0.1
-0.0
-0.3
stress
BHIS with Simvastatin 30 uM
+0.7
-0.9
+0.3
+0.2
-0.0
stress
BHIS with Simvastatin 30 uM
+0.5
-0.3
+0.4
+0.4
+0.2
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