Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4113 and BT4114 are separated by 12 nucleotidesBT4114 and BT4115 are separated by 219 nucleotidesBT4115 and BT4116 are separated by 6 nucleotidesBT4116 and BT4117 are separated by 283 nucleotides BT4113: BT4113 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,382,882 to 5,384,741 BT4113 BT4114: BT4114 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,384,754 to 5,387,969 BT4114 BT4115: BT4115 - conserved hypothetical protein (NCBI ptt file), at 5,388,189 to 5,389,682 BT4115 BT4116: BT4116 - conserved hypothetical protein (NCBI ptt file), at 5,389,689 to 5,391,260 BT4116 BT4117: BT4117 - conserved hypothetical protein (NCBI ptt file), at 5,391,544 to 5,392,338 BT4117
Group Condition BT4113 BT4114 BT4115 BT4116 BT4117
carbon source polygalacturonic (C) -2.3 -2.3 -1.6 -0.6 -0.3
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -2.5 -3.1 -0.6 -0.1 -0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -2.7 -2.9 -0.4 +0.0 +0.1
carbon source Pectin from apple; filtered 1 mg/ml (C) -2.1 -2.4 -0.8 -0.4 +0.0
carbon source Pectin from apple; filtered 1 mg/ml (C) -1.9 -2.2 -1.1 -0.4 +0.0
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -2.0 -2.7 -0.2 -0.1 +0.1
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -2.0 -2.3 -0.2 -0.1 -0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -1.8 -2.0 -0.4 -0.1 -0.2
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -2.1 -2.1 -0.3 +0.1 +0.0
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -1.9 -2.1 -0.2 -0.1 -0.1
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) -1.4 -1.7 -0.8 -0.3 +0.1
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -1.5 -1.9 -0.3 -0.1 +0.1
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -1.3 -1.3 -0.5 -0.3 -0.2
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) -1.4 -1.8 -0.2 -0.3 +0.2
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -1.2 -1.4 -0.7 -0.2 +0.0
carbon source Rhamnogalacturonan - from potato (C) -0.9 -1.3 -0.3 -0.2 -0.0
carbon source Rhamnogalacturonan - from potato (C) -1.2 -1.4 -0.1 -0.3 +0.3
carbon source polygalacturonic -1.1 -0.8 -0.7 -0.4 +0.4
carbon source Pectin (C) -0.8 -0.9 -0.1 -0.2 +0.0
carbon source Pectin -1.1 -0.6 -0.3 +0.1 -0.1
carbon source Pectin (C) -0.8 -0.6 -0.1 -0.3 -0.2
stress BHIS with Dimetridazole 0.0015625 mM -0.3 -0.2 -0.3 -0.5 -0.3
stress BHIS with Cephalothin 0.1 mM -0.2 +0.1 -0.0 -0.9 -0.5
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.7 -0.9 -0.1 -0.0 +0.2
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 -0.8 -0.4 -0.2 +0.4 +0.3
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.6 -0.6 +0.2 +0.3 +0.0
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 -0.2 -0.5 +0.3 +0.5 -0.6
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -0.6 -0.5 -0.1 +0.5 +0.3
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 -0.5 -0.3 +0.2 +0.8 -0.0
phage SJC15_cps8_1MOI +0.1 +0.2 +0.5 +0.4 -0.9
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