Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4086 and BT4087 are separated by 17 nucleotidesBT4087 and BT4088 are separated by 24 nucleotidesBT4088 and BT4089 are separated by 6 nucleotidesBT4089 and BT4090 are separated by 4 nucleotides BT4086: BT4086 - hypothetical protein (NCBI ptt file), at 5,332,526 to 5,332,978 BT4086 BT4087: BT4087 - hypothetical protein (NCBI ptt file), at 5,332,996 to 5,334,048 BT4087 BT4088: BT4088 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,334,073 to 5,337,207 BT4088 BT4089: BT4089 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,337,214 to 5,339,010 BT4089 BT4090: BT4090 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,339,015 to 5,342,095 BT4090
Group Condition BT4086 BT4087 BT4088 BT4089 BT4090
mouse Post-colonization (Day 4) - Cage1A;Mouse3 -2.2 -0.2 -0.2 -0.1 -0.2
carbon source D-Trehalose 20mM (C) -1.9 -0.5 -0.3 -0.0 +0.0
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 -0.8 -0.8 -0.2 -0.2 -0.2
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -1.3 -0.4 -0.3 -0.2 +0.1
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -1.4 -0.0 -0.2 -0.3 -0.1
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse2 -1.0 -0.4 -0.3 -0.3 -0.0
stress BHIS with Dimethyl Sulfoxide 2 vol% -1.5 -0.5 -0.0 +0.0 -0.0
carbon source amylopectin from maize -1.2 -0.5 -0.2 -0.2 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 -0.9 -0.2 -0.2 -0.3 -0.2
carbon source Maltitol 20mM (C) -1.7 +0.2 -0.3 +0.1 -0.0
mouse Post-colonization (Day 7) - Cage1B;Mouse5 -1.5 -0.0 -0.2 -0.1 -0.0
nitrogen source Cytidine (N) -1.4 +0.1 -0.3 -0.2 -0.1
stress BHIS with Dimethyl Sulfoxide 10 vol% -1.2 +0.1 -0.3 -0.2 -0.0
stress BHIS with 2-Mercaptopyridine N-oxide 0.1 mM -1.4 -0.0 -0.3 +0.3 +0.0
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM -1.2 +0.2 -0.2 +0.4 +0.0
stress BHIS with Simvastatin 30 uM -1.0 +0.8 -0.2 +0.1 +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.3 -0.3 +0.1 -0.0 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 +0.6 +0.2 +0.1 -0.1
phage DAC16_cps7_0.1MOI +1.0 +0.5 +0.3 -0.0 -0.1
stress BHIS with Trimethoprim 0.00625 mM +1.1 +0.3 +0.1 +0.3 -0.0
stress BHIS with Trimethoprim 0.00625 mM +1.5 +0.2 +0.3 -0.1 -0.1
stress BHIS with Chlorpromazine 0.2 mM +0.9 +0.6 +0.3 +0.3 +0.2
phage SJC16_cps8_10MOI +0.7 +1.4 +0.1 +0.1 -0.0
stress BHIS with Sulfamonomethoxine 0.2 mM +1.4 +0.3 +0.3 +0.4 +0.0
stress BHIS with Chlorpromazine 0.1 mM +1.8 -0.1 +0.3 +0.2 +0.1
stress BHIS with 5-Fluorouracil 0.1 mM +1.6 +0.9 +0.1 -0.1 -0.0
stress BHIS with Thioridazine 0.0125 mM +1.8 +0.5 +0.6 -0.3 -0.1
stress BHIS with Trimethoprim 0.0125 mM +1.4 +0.6 +0.4 +0.4 +0.2
stress BHIS with 5-Fluorouracil 0.2 mM +1.5 +1.3 +0.3 +0.1 -0.1
stress BHIS with 5-Fluorouracil 0.1 mM +2.0 +1.1 +0.5 +0.2 +0.2
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