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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT4080 and BT4081 are separated by 31 nucleotides
BT4081 and BT4082 are separated by 31 nucleotides
BT4082 and BT4083 are separated by 19 nucleotides
BT4083 and BT4084 are separated by 26 nucleotides
BT4080: BT4080 - conserved hypothetical protein (NCBI ptt file), at 5,321,430 to 5,322,800
BT4080
BT4081: BT4081 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,322,832 to 5,325,933
BT4081
BT4082: BT4082 - hypothetical protein (NCBI ptt file), at 5,325,965 to 5,328,016
BT4082
BT4083: BT4083 - hypothetical protein (NCBI ptt file), at 5,328,036 to 5,329,064
BT4083
BT4084: BT4084 - hypothetical protein (NCBI ptt file), at 5,329,091 to 5,330,422
BT4084
Group
Condition
BT4080
BT4081
BT4082
BT4083
BT4084
mouse_post_colonization
Post-colonization (Day 10) - Cage1;Mouse2
-0.3
-0.3
+0.0
-0.6
-0.2
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.0125 mM
-0.5
-0.4
-0.1
-0.4
+0.0
carbon source
Maltitol 20mM (C)
-0.2
-0.1
-0.3
-0.6
-0.0
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.6
-0.0
+0.3
-0.9
+0.0
carbon source
Pullulan; autoclaved 2.5 mg/ml (C)
-0.6
-0.2
-0.0
-0.4
-0.0
stress
BHIS with Dimethyl Sulfoxide 10 vol%
+0.1
+0.0
-0.5
-0.6
-0.1
mouse
Post-colonization (Day 4) - Cage1B;Mouse4
-0.4
+0.2
-0.3
-0.5
-0.0
stress
BHIS with Dimethyl Sulfoxide 9 vol%
+0.2
-0.2
-0.6
-0.2
-0.2
stress
BHIS with Fusidic 0.002 mg/ml
+0.2
-0.1
-0.3
-0.4
-0.3
stress
BHIS with Chloride 350 mM
+0.2
-0.1
-0.3
-0.6
-0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.2
+0.2
+0.1
-0.7
-0.1
carbon source
Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
-0.4
-0.2
+0.2
-0.3
+0.1
stress
BHIS with Simvastatin 30 uM
+0.3
+0.1
+0.2
-0.4
-0.2
stress
BHIS with Fusidic 0.004 mg/ml
+0.6
-0.1
-0.3
-0.2
+0.1
stress
Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM
-0.6
+0.2
+0.3
+0.1
+0.1
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
+0.5
-0.2
-0.3
-0.1
+0.2
nitrogen source
Ammonium chloride (N)
+0.5
+0.2
+0.1
-0.2
-0.3
phage
SJC12_cps8_0.1MOI
-0.3
+0.5
+0.2
+0.3
-0.0
phage
ARB14_cps1_0.1MOI
-0.2
+0.6
+0.0
+0.5
-0.0
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
+0.4
+0.3
+0.3
-0.2
+0.2
stress
BHIS with Cephalothin 0.2 mM
-0.2
+0.2
+0.3
+0.9
+0.1
stress
BHIS with Chlorpromazine 0.2 mM
-0.3
+0.3
+0.6
+0.2
+0.4
stress
BHIS with Chlorpromazine 0.1 mM
-0.1
+0.0
+0.5
+0.4
+0.3
stress
BHIS with Trimethoprim 0.00625 mM
-0.0
+0.2
+0.4
+0.2
+0.4
stress
Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM
+0.6
+0.2
+0.1
+0.0
+0.3
stress
Bile salts 0.5 mg/ml
+0.3
+0.2
+0.3
+0.3
+0.2
stress
BHIS with Paraquat dichloride 0.1 mg/ml
+0.5
+0.2
+0.4
+0.2
+0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.4
+0.3
+0.4
+0.3
+0.1
stress
BHIS with Trimethoprim 0.0125 mM
-0.0
+0.4
+0.4
+0.3
+0.6
stress
BHIS with 5-Fluorouracil 0.1 mM
-0.0
+0.5
+0.8
+0.5
+0.4
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