Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT4031 and BT4032 are separated by 394 nucleotidesBT4032 and BT4033 are separated by 226 nucleotidesBT4033 and BT4034 are separated by 272 nucleotidesBT4034 and BT4035 are separated by 309 nucleotides BT4031: BT4031 - N-acetylmuramoyl-L-alanine amidase (NCBI ptt file), at 5,243,999 to 5,244,502 BT4031 BT4032: BT4032 - conserved hypothetical protein, putative non-specific DNA-binding protein (NCBI ptt file), at 5,244,897 to 5,245,373 BT4032 BT4033: BT4033 - hypothetical protein (NCBI ptt file), at 5,245,600 to 5,246,088 BT4033 BT4034: BT4034 - hypothetical protein (NCBI ptt file), at 5,246,361 to 5,246,783 BT4034 BT4035: BT4035 - hypothetical protein (NCBI ptt file), at 5,247,093 to 5,247,413 BT4035
Group Condition BT4031 BT4032 BT4033 BT4034 BT4035
carbon source Red Arabinan from sugar-beet (C) -0.2 -0.9 -0.9 -1.0 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 +0.2 -1.0 -0.0 -1.6 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage5;Mouse1 +0.5 +0.0 -0.5 -2.0 N.D.
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 +0.5 -1.4 -0.6 -0.3 N.D.
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 +0.6 -0.3 +0.0 -1.8 N.D.
stress BHIS with Cefoxitin 0.025 mM -0.4 -0.6 +1.1 -1.6 N.D.
carbon source Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) -0.6 +0.8 -1.2 -0.3 N.D.
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 +0.7 -1.1 +0.3 -1.2 N.D.
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 +1.4 -0.3 -0.7 -1.6 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse4 +0.7 -0.1 +0.3 -2.0 N.D.
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 +0.9 -0.4 -0.9 -0.7 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 +0.9 -0.7 +0.1 -1.3 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 +1.0 -1.1 +0.2 -0.5 N.D.
stress Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM +0.6 +0.6 -0.7 -0.9 N.D.
phage HNL05_cps7_0.1MOI -0.3 +0.0 +1.5 -1.5 N.D.
mouse_post_colonization Post-colonization (Day 4) - Cage1;Mouse2 +0.8 +0.3 +0.4 -1.5 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 +0.8 -0.3 -0.9 +0.7 N.D.
mouse_post_colonization Post-colonization (Day 4) - Cage6;Mouse2 +1.0 -0.5 +0.6 -0.9 N.D.
carbon source Mannan from Saccharomyces cerevisiae (C) -0.3 +0.8 -0.9 +0.9 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 +1.1 -0.7 +0.8 -0.6 N.D.
stress BHIS with Thioridazine 0.0125 mM +0.7 -1.2 +1.0 +0.2 N.D.
stress BHIS with Irgasan 0.0125 mM +0.6 -0.9 -0.1 +1.2 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 +1.3 +0.1 +0.9 -1.2 N.D.
stress BHIS with 5-Fluorouracil 0.1 mM +0.8 +0.1 +1.3 -0.9 N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% -0.2 +0.7 -0.6 +1.3 N.D.
phage SJC12_cps8_0.1MOI +0.7 +0.9 -0.7 +0.6 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.6 +0.2 +0.6 -0.8 N.D.
stress BHIS with 5-Fluorouracil 0.1 mM +0.8 +0.7 +1.3 -0.6 N.D.
stress BHIS with Chlorpromazine 0.1 mM +0.5 -0.6 +1.4 +1.0 N.D.
carbon source Heparin from porcine intestinal mucosa (C) +0.8 +1.1 +0.8 -0.0 N.D.
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