Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3956 and BT3957 are separated by 304 nucleotidesBT3957 and BT3958 are separated by 631 nucleotidesBT3958 and BT3959 are separated by 24 nucleotidesBT3959 and BT3960 are separated by 57 nucleotides BT3956: BT3956 - conserved hypothetical protein (NCBI ptt file), at 5,140,401 to 5,141,792 BT3956 BT3957: BT3957 - transcriptional regulator (NCBI ptt file), at 5,142,097 to 5,146,044 BT3957 BT3958: BT3958 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,146,676 to 5,149,828 BT3958 BT3959: BT3959 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 5,149,853 to 5,151,817 BT3959 BT3960: BT3960 - conserved hypothetical protein (NCBI ptt file), at 5,151,875 to 5,153,401 BT3960
Group Condition BT3956 BT3957 BT3958 BT3959 BT3960
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) -0.3 -0.5 -0.1 -0.1 -0.8
stress BHIS with Fusidic 0.002 mg/ml -0.1 -0.1 -0.2 -0.3 -0.9
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.3 +0.2 +0.3 -0.2 -0.6
mouse_post_colonization Post-colonization (Day 1) - Cage4;Mouse5 +0.3 +0.1 +0.3 -0.1 -0.9
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 +0.5 +0.2 -0.0 +0.2 -0.6
control NoPhage -0.6 +0.3 +0.3 +0.4 +0.1
mouse Post-colonization (Day 7) - Cage1A;Mouse1 -0.3 +0.2 -0.1 +0.5 +0.5
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 +0.4 +0.5 +0.1 +0.3 -0.4
stress BHIS with Trimethoprim 0.0125 mM +0.1 +0.4 +0.3 +0.5 -0.2
phage SJC12_cps8_0.1MOI -0.3 +0.4 +0.5 +0.3 +0.3
phage DAC23_cps8_10MOI -0.2 +0.3 +0.3 +0.5 +0.2
phage DAC22_cps8_0.1MOI -0.3 +0.3 +0.2 +0.5 +0.5
control NoPhage -0.2 +0.3 +0.3 +0.4 +0.4
phage SJC03_cps7_0.1MOI -0.1 +0.3 +0.4 +0.4 +0.3
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 +0.8 +0.4 -0.1 +0.4 -0.1
stress BHIS with Sulfamonomethoxine 0.2 mM -0.0 +0.0 +0.2 +0.8 +0.5
phage SJC03_cps7_0.1MOI +0.3 +0.3 +0.3 +0.5 +0.1
phage DAC16_cps7_0.1MOI -0.0 +0.3 +0.3 +0.5 +0.5
phage SJC25_Acapsular_0.1MOI +0.2 +0.3 +0.3 +0.4 +0.3
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.6 +0.3 -0.1 +0.6 +0.2
phage HNL05_cps7_0.1MOI -0.1 +0.4 +0.4 +0.5 +0.4
phage HNL05_cps7_0.1MOI -0.0 +0.4 +0.5 +0.3 +0.4
carbon source D-Ribose (C) -0.1 +0.3 +0.6 +0.7 +0.2
phage SJC16_cps8_1MOI -0.0 +0.2 +0.6 +0.3 +0.6
phage SJC12_cps8_0.1MOI -0.2 +0.4 +0.5 +0.5 +0.5
phage ARB14_cps1_0.1MOI +0.0 +0.2 +0.7 +0.2 +0.6
phage SJC16_cps8_10MOI -0.1 +0.4 +0.7 +0.2 +0.5
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 +0.4 +0.3 +0.2 +0.6 +0.4
stress BHIS with 5-Fluorouracil 0.1 mM +0.4 +0.2 +0.3 +0.5 +0.5
phage SJC15_cps8_1MOI -0.1 +0.2 +0.6 +0.5 +0.7
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