Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3887 and BT3888 are separated by 198 nucleotidesBT3888 and BT3889 are separated by 24 nucleotidesBT3889 and BT3890 are separated by 89 nucleotidesBT3890 and BT3891 are separated by 11 nucleotides BT3887: BT3887 - hypothetical protein (NCBI ptt file), at 5,058,397 to 5,058,645 BT3887 BT3888: BT3888 - putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase (NCBI ptt file), at 5,058,844 to 5,059,899 BT3888 BT3889: BT3889 - subtilisin-like serine proteases (NCBI ptt file), at 5,059,924 to 5,061,279 BT3889 BT3890: BT3890 - putative exodeoxyribonuclease VII large subunit (NCBI ptt file), at 5,061,369 to 5,062,622 BT3890 BT3891: BT3891 - hypothetical protein (NCBI ptt file), at 5,062,634 to 5,062,840 BT3891
Group Condition BT3887 BT3888 BT3889 BT3890 BT3891
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.8 N.D. -0.6 -1.8 -3.1
carbon source L-Rhamnose (C) -0.5 N.D. -0.2 +0.0 -4.5
carbon source D-Ribose (C) -1.2 N.D. -0.2 +0.3 -3.8
stress BHIS with Trimethoprim 0.0125 mM -0.2 N.D. -0.8 -0.1 -3.0
stress BHIS with Trimethoprim 15 uM -0.4 N.D. -0.4 -0.9 -2.3
stress BHIS with Trimethoprim 15 uM -0.9 N.D. -0.5 -0.4 -1.8
stress BHIS with DAMPA 60 uM +0.2 N.D. -0.5 -1.2 -2.2
carbon source Heparin from porcine intestinal mucosa (C) -3.5 N.D. -0.1 +0.2 -0.0
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 -0.8 N.D. +0.1 -0.4 -2.2
stress BHIS with Paraquat dichloride 0.1 mg/ml -2.7 N.D. -0.2 +0.0 -0.4
stress BHIS with Trimethoprim 15 uM +0.0 N.D. -0.6 -0.9 -1.8
stress BHIS with Chlorpromazine 0.1 mM -0.6 N.D. -1.5 -0.1 -1.1
stress BHIS with Sulfaquinoxaline 0.1 mM +0.0 N.D. -0.3 -0.8 -1.8
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml -1.6 N.D. -0.9 -0.7 +0.4
carbon source L-Fucose (C) -0.7 N.D. -0.3 +0.1 -1.8
carbon source Mannan from Saccharomyces cerevisiae (C) -1.7 N.D. +0.5 -1.2 -0.3
stress Varel_Bryant_medium_Glucose with Metronidazole 0.0015625 mM -0.8 N.D. +0.0 +0.2 -2.0
stress BHIS with 5-Fluorouracil 0.1 mM -0.5 N.D. -0.5 +0.3 -1.9
carbon source Heparin from porcine intestinal mucosa (C) -2.3 N.D. +0.2 +0.4 -0.7
carbon source D-Galacturonic Acid (C) -2.4 N.D. -0.5 -0.0 +0.8
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) -0.6 N.D. +0.6 -1.1 -0.9
stress BHIS with DAMPA 60 uM +0.5 N.D. -0.0 -0.7 -1.7
mouse_peg_treatment PEG (Day 3) - Cage1;Mouse2 -0.3 N.D. +0.8 -0.5 -1.8
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -0.7 N.D. +0.9 -0.4 -0.9
stress BHIS with Thioridazine 0.0125 mM +1.0 N.D. -0.1 +0.2 -2.1
mouse_post_colonization Post-colonization (Day 2) - Cage3;Mouse4 -1.1 N.D. -0.6 +0.2 +1.1
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml +0.7 N.D. -1.0 -0.4 +0.8
stress BHIS with Simvastatin 30 uM +1.3 N.D. -0.7 -0.7 +0.8
stress BHIS with Ceftazidime 0.5 mg/ml -1.3 N.D. +0.8 +1.3 +0.7
stress BHIS with Fusidic 0.004 mg/ml +1.0 N.D. +0.1 +0.2 +1.8
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