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Cofit
Protein
Homologs
Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT3665 and BT3666 are separated by 11 nucleotides
BT3666 and BT3667 are separated by 76 nucleotides
BT3667 and BT3668 are separated by 216 nucleotides
BT3668 and BT3669 are separated by 80 nucleotides
BT3665: BT3665 - alpha-L-fucosidase precursor (NCBI ptt file), at 4,754,745 to 4,756,388
BT3665
BT3666: BT3666 - conserved hypothetical protein (NCBI ptt file), at 4,756,400 to 4,756,789
BT3666
BT3667: BT3667 - transcriptional regulator (NCBI ptt file), at 4,756,866 to 4,757,726
BT3667
BT3668: BT3668 - hypothetical protein (NCBI ptt file), at 4,757,943 to 4,758,677
BT3668
BT3669: BT3669 - conserved hypothetical protein (NCBI ptt file), at 4,758,758 to 4,759,348
BT3669
Group
Condition
BT3665
BT3666
BT3667
BT3668
BT3669
stress
Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM
-0.3
-0.3
-0.0
-0.1
-1.8
stress
BHIS with Simvastatin 30 uM
-0.1
-0.3
+0.1
-0.1
-1.8
stress
BHIS with Simvastatin 30 uM
-0.3
+0.0
+0.1
-0.2
-1.7
stress
BHIS with DAMPA 60 uM
-0.1
-0.1
+0.0
-0.6
-1.4
phage
SJC03_cps7_0.1MOI
-0.1
-0.6
-0.1
-0.3
-0.8
stress
BHIS with Sulfamonomethoxine 0.1 mM
+0.1
-0.4
-0.0
-0.1
-1.5
carbon source
Heparin from porcine intestinal mucosa (C)
-0.4
-0.5
-0.1
-0.3
-0.5
stress
Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM
-0.1
-0.4
-0.2
-0.1
-1.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.3
+0.1
+0.2
-0.7
-0.9
stress
Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM
+0.1
-0.3
-0.3
+0.2
-1.2
phage
DAC16_cps7_10MOI
+0.2
-0.5
+0.0
-0.4
-0.7
phage
SJC16_cps8_1MOI
+0.2
-0.3
+0.4
+0.3
-1.8
mouse_post_colonization
Post-colonization (Day 14) - Cage7;Mouse3
-0.3
-0.1
+0.3
-0.9
-0.2
stress
BHIS with Trimethoprim 0.00625 mM
-0.2
+0.2
+0.3
-0.2
-1.2
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.0
+0.4
-0.2
-1.2
-0.2
stress
BHIS with Cefoxitin 0.0125 mM
+0.3
-0.1
+0.1
+0.2
-1.4
stress
BHIS with Trimethoprim 0.00625 mM
+0.3
-0.2
+0.3
-0.1
-1.0
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
+0.1
-0.5
+0.6
-0.0
-0.9
stress
BHIS with Thioridazine 0.025 mM
-0.0
-0.4
+0.1
+0.7
-1.0
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.3
-0.4
+0.4
-0.4
-0.5
stress
BHIS with Chlorpromazine 0.2 mM
+0.2
-0.4
+0.4
+0.2
-0.8
stress
Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM
-0.1
+0.7
-0.1
-0.2
-0.7
stress
BHIS with 5-Fluorouracil 0.1 mM
+0.2
+0.0
+0.5
-0.0
-1.2
stress
BHIS with Sulfamethizole 0.1 mM
+0.3
+0.4
+0.1
+0.1
-1.2
mouse_post_colonization
Post-colonization (Day 1) - Cage1;Mouse3
+0.3
-0.5
+0.2
+0.2
-0.6
stress
BHIS with Doxycycline hyclate 0.000390625 mM
-0.2
+0.5
+0.1
+0.6
-1.2
mouse
Post-colonization (Day 7) - Cage1B;Mouse5
-0.1
+0.3
-0.2
-0.8
+0.6
stress
BHIS with Chlorpromazine 0.1 mM
+0.5
-0.6
+0.3
+0.2
-0.4
stress
BHIS with Irgasan 0.0125 mM
+0.3
-0.4
+0.3
+0.3
-0.6
survival
aerobic shaking 48 hr copy A
+0.2
-0.3
+0.6
+0.9
-0.6
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