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Cofit
Protein
Homologs
Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT3657 and BT3658 are separated by 289 nucleotides
BT3658 and BT3659 are separated by 405 nucleotides
BT3659 and BT3660 are separated by 84 nucleotides
BT3660 and BT3661 are separated by 227 nucleotides
BT3657: BT3657 - alpha-L-arabinofuranosidase A precursor (NCBI ptt file), at 4,738,696 to 4,741,173
BT3657
BT3658: BT3658 - hypothetical protein (NCBI ptt file), at 4,741,463 to 4,741,675
BT3658
BT3659: BT3659 - alpha-xylosidase (NCBI ptt file), at 4,742,081 to 4,744,555
BT3659
BT3660: BT3660 - transcriptional regulator (NCBI ptt file), at 4,744,640 to 4,747,354
BT3660
BT3661: BT3661 - alpha-glucosidase (NCBI ptt file), at 4,747,582 to 4,749,525
BT3661
Group
Condition
BT3657
BT3658
BT3659
BT3660
BT3661
phage
SJC03_cps7_0.1MOI
-0.5
-0.6
-0.3
-0.1
+0.1
stress
BHIS with Dimetridazole 0.025 mM
-0.2
-0.4
-0.2
+0.1
-0.6
stress
Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM
-0.4
-0.7
-0.2
+0.1
+0.2
carbon source
(+)-Arabinogalactan (C)
-0.1
+0.4
-0.0
+0.3
-1.4
stress
BHIS with Trimethoprim 0.0125 mM
-0.4
+0.1
-0.6
-0.2
+0.4
stress
BHIS with Thioridazine 0.0125 mM
-0.2
-0.5
-0.2
-0.2
+0.4
phage
SJC16_cps8_10MOI
-0.1
-0.7
-0.6
-0.2
+0.9
stress
BHIS with Cephalothin 0.625 mg/ml
-0.4
+0.3
-0.6
-0.0
+0.2
phage
HNL05_cps7_0.1MOI
-0.4
+0.3
-0.3
-0.2
+0.2
phage
SJC16_cps8_1MOI
-0.2
-0.2
-0.4
-0.1
+0.5
stress
BHIS with Thioridazine 0.025 mM
-0.4
-0.1
-0.2
-0.1
+0.6
carbon source
Heparin from porcine intestinal mucosa (C)
+0.0
-0.2
-0.5
-0.3
+0.7
stress
BHIS with Cefoxitin 0.025 mM
-0.3
-0.5
-0.0
+0.1
+0.6
stress
BHIS with Chlorpromazine 0.1 mM
-0.2
-0.3
-0.5
+0.1
+0.6
carbon source
(+)-Arabinogalactan (C)
+0.1
+0.4
+0.3
+0.2
-1.1
stress
BHIS with Trimethoprim 0.00625 mM
-0.3
-0.1
-0.4
-0.1
+0.8
stress
Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM
+0.2
+0.4
-0.4
+0.1
-0.5
stress
BHIS with Benzethonium chloride 0.002 mM
-0.3
+0.4
-0.4
+0.1
+0.2
stress
BHIS with Paraquat dichloride 0.1 mg/ml
+0.3
-0.4
-0.3
-0.1
+0.5
stress
BHIS with 5-Fluorouracil 0.2 mM
-0.2
+0.2
-0.4
-0.0
+0.6
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
-0.0
+0.9
+0.0
-0.2
-0.4
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.1
+0.3
+0.8
-0.1
-0.3
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
+0.3
-0.4
+0.4
+0.0
+0.4
stress
BHIS with Dimethyl Sulfoxide 9 vol%
+0.1
+0.6
+0.2
+0.4
-0.5
carbon source
Beta-Lactose (C)
+0.3
+0.5
+0.2
+0.2
-0.4
stress
BHIS with Dimethyl Sulfoxide 10 vol%
+0.4
+0.4
-0.1
+0.4
-0.3
stress
Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
+0.2
+0.5
-0.2
+0.1
+0.5
mouse_post_colonization
Post-colonization (Day 12) - Cage2;Mouse2
+0.3
+0.7
-0.0
+0.2
+0.2
stress
Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM
+0.4
+0.5
+0.2
+0.1
+0.3
stress
Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
+0.2
+0.3
+0.1
+0.2
+0.8
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