Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3586 and BT3587 are separated by 6 nucleotidesBT3587 and BT3588 overlap by 20 nucleotidesBT3588 and BT3589 are separated by 31 nucleotidesBT3589 and BT3590 are separated by 143 nucleotides BT3586: BT3586 - putative dehydrogenase (NCBI ptt file), at 4,640,662 to 4,641,666 BT3586 BT3587: BT3587 - glucosamine-6-phosphate isomerase (NCBI ptt file), at 4,641,673 to 4,642,458 BT3587 BT3588: BT3588 - N-acetylglucosamine-6-phosphate deacetylase (NCBI ptt file), at 4,642,439 to 4,643,626 BT3588 BT3589: BT3589 - glucose/galactose transporter (NCBI ptt file), at 4,643,658 to 4,644,974 BT3589 BT3590: BT3590 - alpha-N-acetylglucosaminidase precursor (NCBI ptt file), at 4,645,118 to 4,647,316 BT3590
Group Condition BT3586 BT3587 BT3588 BT3589 BT3590
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.3 -0.1 -0.4 -0.4 -0.1
stress Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM -0.1 -0.6 -0.4 +0.1 -0.3
carbon source Mannan from Saccharomyces cerevisiae (C) -0.4 -0.5 +0.1 -0.3 -0.1
stress BHIS with 5-Fluorouracil 0.1 mM +0.5 -0.4 -0.2 -0.2 -0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.3 -0.4 +0.1 -0.5 -0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.3 -0.7 +0.4 -0.4 -0.3
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM -0.4 -0.5 +0.2 +0.3 +0.0
stress BHIS with 5-Fluorouracil 0.2 mM +0.3 -0.4 +0.3 -0.2 -0.3
phage ARB14_cps1_0.1MOI +0.5 -0.5 +0.5 -0.4 -0.2
stress BHIS with 5-Fluorouracil 0.1 mM +0.6 -0.2 +0.3 -0.1 -0.6
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 +0.4 +0.6 -0.3 -0.2 -0.4
phage SJC12_cps8_0.1MOI +0.3 +0.6 +0.1 -0.2 -0.3
phage HNL05_cps7_1MOI +0.5 +0.2 +0.3 -0.1 -0.2
stress BHIS with Trimethoprim 0.00625 mM +0.3 +0.3 +0.4 -0.1 -0.2
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 -0.3 +0.3 +0.2 +0.2 +0.3
stress Varel_Bryant medium with 2,2-dibromo-2-cyanoacetamide 0.2 mM +0.3 +0.6 -0.2 -0.1 +0.2
phage SJC16_cps8_1MOI +0.2 -0.1 +0.8 -0.4 +0.4
phage DAC16_cps7_10MOI +0.3 +0.5 +0.3 -0.2 -0.1
phage SJC12_cps8_0.1MOI +0.7 +0.5 +0.4 -0.4 -0.2
stress BHIS with Fusidic 0.004 mg/ml +0.2 +0.9 -0.3 +0.2 -0.0
stress BHIS with Cefoxitin 0.025 mM -0.1 +0.9 -0.1 +0.5 -0.2
phage DAC23_cps8_0.1MOI +0.5 +0.9 -0.1 +0.0 -0.1
phage DAC16_cps7_1MOI +0.4 +0.8 +0.1 +0.0 -0.1
phage HNL05_cps7_0.1MOI +0.6 +0.7 +0.1 +0.1 -0.2
phage SJC16_cps8_10MOI +0.4 +1.1 +0.3 +0.3 -0.7
phage DAC22_cps8_0.1MOI +0.3 +0.7 +0.2 +0.1 +0.0
phage DAC17_cps3_0.1MOI +0.3 +0.7 +0.2 +0.3 -0.1
stress Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% +0.6 +0.1 +0.2 +0.4 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 +0.2 +0.7 -0.1 +0.1 +0.5
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.3 +0.5 +0.4 +0.1 +0.2
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