Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3461 and BT3462 are separated by 18 nucleotidesBT3462 and BT3463 overlap by 4 nucleotidesBT3463 and BT3464 overlap by 4 nucleotidesBT3464 and BT3465 are separated by 23 nucleotides BT3461: BT3461 - deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI ptt file), at 4,457,047 to 4,457,481 BT3461 BT3462: BT3462 - TPR domain protein (NCBI ptt file), at 4,457,500 to 4,459,254 BT3462 BT3463: BT3463 - hypothetical protein (NCBI ptt file), at 4,459,251 to 4,459,832 BT3463 BT3464: BT3464 - putative peptidase (NCBI ptt file), at 4,459,829 to 4,461,136 BT3464 BT3465: BT3465 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 4,461,160 to 4,465,197 BT3465
Group Condition BT3461 BT3462 BT3463 BT3464 BT3465
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 N.D. -2.3 N.D. -1.0 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 N.D. -3.0 N.D. -0.4 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 N.D. -2.1 N.D. -0.9 +0.0
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 N.D. -2.7 N.D. -0.5 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 N.D. -2.9 N.D. -0.3 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 N.D. -2.3 N.D. -0.8 +0.1
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 N.D. -2.4 N.D. -0.6 +0.1
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 N.D. -2.9 N.D. -0.2 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 N.D. -2.5 N.D. -0.6 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 N.D. -2.3 N.D. -0.7 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 N.D. -2.0 N.D. -1.0 +0.2
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 N.D. -2.4 N.D. -0.4 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 N.D. -2.1 N.D. -0.7 +0.2
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse4 N.D. -2.5 N.D. -0.2 +0.1
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse4 N.D. -2.1 N.D. -0.5 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse3 N.D. -2.5 N.D. -0.2 +0.2
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 N.D. -2.9 N.D. +0.2 +0.3
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse5 N.D. -2.3 N.D. -0.3 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 N.D. -2.2 N.D. -0.4 +0.2
mouse Post-colonization (Day 7) - Cage1C;Mouse1 N.D. -1.9 N.D. -0.6 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 N.D. -2.3 N.D. -0.3 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse5 N.D. -2.3 N.D. -0.3 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 N.D. -2.0 N.D. -0.7 +0.4
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 N.D. -2.1 N.D. -0.3 +0.2
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 N.D. -2.2 N.D. -0.2 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage2;Mouse1 N.D. -2.0 N.D. -0.5 +0.2
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 N.D. -2.0 N.D. -0.4 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse2 N.D. -2.0 N.D. -0.4 +0.2
mouse_post_colonization Post-colonization (Day 6) - Cage5;Mouse4 N.D. -2.3 N.D. +0.2 +0.2
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM N.D. -1.8 N.D. +0.9 +0.1
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