Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3460 and BT3461 are separated by 124 nucleotidesBT3461 and BT3462 are separated by 18 nucleotidesBT3462 and BT3463 overlap by 4 nucleotidesBT3463 and BT3464 overlap by 4 nucleotides BT3460: BT3460 - dGTP triphosphohydrolase (NCBI ptt file), at 4,455,570 to 4,456,922 BT3460 BT3461: BT3461 - deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI ptt file), at 4,457,047 to 4,457,481 BT3461 BT3462: BT3462 - TPR domain protein (NCBI ptt file), at 4,457,500 to 4,459,254 BT3462 BT3463: BT3463 - hypothetical protein (NCBI ptt file), at 4,459,251 to 4,459,832 BT3463 BT3464: BT3464 - putative peptidase (NCBI ptt file), at 4,459,829 to 4,461,136 BT3464
Group Condition BT3460 BT3461 BT3462 BT3463 BT3464
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 -0.5 N.D. -2.0 N.D. -1.0
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 -0.2 N.D. -2.3 N.D. -0.8
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 +0.2 N.D. -3.0 N.D. -0.4
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 +0.2 N.D. -2.3 N.D. -1.0
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 -0.0 N.D. -2.5 N.D. -0.6
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 +0.2 N.D. -2.7 N.D. -0.5
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.1 N.D. -2.9 N.D. -0.3
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 +0.0 N.D. -2.9 N.D. -0.2
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -0.2 N.D. -2.4 N.D. -0.4
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 +0.1 N.D. -2.1 N.D. -0.9
survival aerobic shaking 48 hr copy B -0.4 N.D. -2.0 N.D. -0.5
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 +0.1 N.D. -2.4 N.D. -0.6
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 +0.2 N.D. -2.3 N.D. -0.7
carbon source (+)-Arabinogalactan (C) -0.5 N.D. -1.2 N.D. -1.2
stress Bile salts 0.5 mg/ml -0.5 N.D. -1.5 N.D. -0.8
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse4 -0.0 N.D. -2.1 N.D. -0.5
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 +0.2 N.D. -2.1 N.D. -0.7
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 +0.1 N.D. -2.9 N.D. +0.2
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse4 +0.1 N.D. -2.5 N.D. -0.2
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse3 +0.2 N.D. -2.5 N.D. -0.2
stress BHIS with Trimethoprim 15 uM -1.8 N.D. -1.4 N.D. +0.7
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 +0.2 N.D. -2.2 N.D. -0.4
mouse Post-colonization (Day 7) - Cage1C;Mouse1 +0.2 N.D. -1.9 N.D. -0.6
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 +0.4 N.D. -2.0 N.D. -0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.4 N.D. -1.1 N.D. +0.7
stress Varel_Bryant_medium_Glucose with Oxytetracycline 0.000390625 mM -0.4 N.D. -1.8 N.D. +0.5
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM -0.7 N.D. -1.8 N.D. +0.9
stress BHIS with Trimethoprim 15 uM -1.5 N.D. -0.6 N.D. +1.0
stress BHIS with Trimethoprim 15 uM -1.2 N.D. -0.9 N.D. +1.3
stress BHIS with 5-Fluorouracil 0.1 mM -1.8 N.D. +0.1 N.D. +1.2
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