Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3409 and BT3410 are separated by 306 nucleotidesBT3410 and BT3411 are separated by 759 nucleotidesBT3411 and BT3412 are separated by 465 nucleotidesBT3412 and BT3413 are separated by 172 nucleotides BT3409: BT3409 - aminotransferase, putative cysteine desulfurase (NCBI ptt file), at 4,390,580 to 4,391,791 BT3409 BT3410: BT3410 - conserved hypothetical protein (NCBI ptt file), at 4,392,098 to 4,392,421 BT3410 BT3411: BT3411 - pyrophosphate-energized vacuolar membrane proton pump (NCBI ptt file), at 4,393,181 to 4,395,385 BT3411 BT3412: BT3412 - ribonuclease HII (NCBI ptt file), at 4,395,851 to 4,396,453 BT3412 BT3413: BT3413 - hypothetical protein (NCBI ptt file), at 4,396,626 to 4,398,083 BT3413
Group Condition BT3409 BT3410 BT3411 BT3412 BT3413
stress BHIS with Chenodeoxycholic 0.25 mg/ml N.D. -0.1 -0.1 -1.0 -0.5
stress BHIS with Chenodeoxycholic 0.25 mg/ml N.D. +0.0 -0.2 -0.7 -0.8
carbon source Laminaribiose (C) N.D. -0.2 -0.1 -1.0 -0.1
mouse_post_colonization Post-colonization (Day 2) - Cage2;Mouse3 N.D. -0.4 -0.3 -0.4 -0.2
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 N.D. -0.3 +0.0 -0.7 -0.4
phage HNL05_cps7_0.1MOI N.D. -0.3 -0.2 -0.9 +0.1
phage DAC20_cps8_1MOI N.D. -0.2 -0.5 -0.7 +0.1
phage ARB14_cps1_0.1MOI N.D. -0.3 +0.0 -0.8 +0.3
stress BHIS with Lithocholic 0.4 mg/ml N.D. -0.3 +0.2 -0.4 -0.5
stress BHIS with Lithocholic 0.4 mg/ml N.D. -0.0 +0.2 -0.5 -0.5
stress BHIS with Deoxycholic 0.2 mg/ml N.D. +0.2 +0.1 -0.3 -0.8
carbon source (+)-Arabinogalactan (C) N.D. -0.4 +0.2 -0.7 +0.2
stress BHIS with Cephalothin 0.625 mg/ml N.D. +0.5 -0.3 -0.6 -0.0
stress BHIS with Vancomycin 0.016 mg/ml N.D. +0.6 -0.0 -0.8 -0.1
stress BHIS with Cephalothin 0.625 mg/ml N.D. +0.7 +0.0 -0.8 +0.0
stress BHIS with Vancomycin 0.016 mg/ml N.D. +0.8 -0.3 -0.3 +0.0
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) N.D. -0.3 -0.3 +0.6 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 N.D. -0.4 +0.1 +0.8 -0.1
stress BHIS with Cephalothin 0.1 mM N.D. +0.8 +0.2 -0.3 -0.3
stress BHIS with Chlorpromazine 0.1 mM N.D. +0.9 -0.0 -0.2 -0.2
carbon source Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) N.D. -0.4 +0.1 +0.5 +0.5
stress BHIS with Sulfamethizole 0.1 mM N.D. +0.4 +0.3 -0.3 +0.3
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml N.D. +0.3 +0.3 -0.4 +0.4
stress BHIS with Thioridazine 0.025 mM N.D. +0.8 -0.1 +0.2 -0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.8 +0.2 -0.1 -0.2
stress Varel_Bryant medium with Chlorpromazine 0.05 mM N.D. +0.6 +0.1 -0.3 +0.3
stress BHIS with Cephalothin 0.2 mM N.D. +0.9 -0.1 -0.1 +0.2
stress BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM N.D. +1.3 +0.0 -0.4 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.7 +0.2 +0.5 -0.2
stress BHIS with Cefoxitin 0.025 mM N.D. +1.2 -0.2 +0.5 -0.1
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